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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-02-25 18:05:05 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-02-25 18:05:05 +0000 |
| commit | 61058ea3cc3c2ce96f50bfc9e33c5f6487c0e557 (patch) | |
| tree | 5e765c977184eae49b3594996c8caeb0a13a42ff /sci-biology/express | |
| parent | Stable on alpha, bug #400225 (diff) | |
| download | gentoo-2-61058ea3cc3c2ce96f50bfc9e33c5f6487c0e557.tar.gz gentoo-2-61058ea3cc3c2ce96f50bfc9e33c5f6487c0e557.tar.bz2 gentoo-2-61058ea3cc3c2ce96f50bfc9e33c5f6487c0e557.zip | |
New package, ebuild written by me
(Portage version: 2.2.0_alpha74/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/express')
| -rw-r--r-- | sci-biology/express/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/express/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/express/express-0.9.5.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/express/metadata.xml | 9 |
4 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/express/ChangeLog b/sci-biology/express/ChangeLog new file mode 100644 index 000000000000..7ca8c33c22b6 --- /dev/null +++ b/sci-biology/express/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/express +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/ChangeLog,v 1.1 2012/02/25 18:05:05 weaver Exp $ + +*express-0.9.5 (25 Feb 2012) + + 25 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +express-0.9.5.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest new file mode 100644 index 000000000000..d4d6dd71c09d --- /dev/null +++ b/sci-biology/express/Manifest @@ -0,0 +1,4 @@ +DIST express-0.9.5-src.tgz 766024 RMD160 eb21c8dcde5f105b74ffd6fc702b45f5ff58933a SHA1 98e440a845aa62fd6161f7bbea857a357ef2ebe6 SHA256 e17250d62750560c2dc9cb579f58784b5076afb74088f36523ddd623e08bc022 +EBUILD express-0.9.5.ebuild 848 RMD160 8aed92fff673d348563624660ec597014604cbf1 SHA1 54d98b6a7c3eb9970c2b1d23c496754426c71658 SHA256 4470b689baaa1c1fb478c42805711126e4a6cff8a36f0d672d1f35f1134ce047 +MISC ChangeLog 277 RMD160 33f76a9b6437085f4206376bf8b9eb858f5562ec SHA1 0252aecf958cd6432b7806b43d1056c13e04cbf9 SHA256 03e16c0f749b88fcc17370f4daf9272e1f6c93a41b95825e0894705a0bff0d45 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/express/express-0.9.5.ebuild b/sci-biology/express/express-0.9.5.ebuild new file mode 100644 index 000000000000..56dfe3e1b520 --- /dev/null +++ b/sci-biology/express/express-0.9.5.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/express-0.9.5.ebuild,v 1.1 2012/02/25 18:05:05 weaver Exp $ + +EAPI=4 + +inherit cmake-utils + +DESCRIPTION="Streaming RNA-Seq Analysis" +HOMEPAGE="http://bio.math.berkeley.edu/eXpress/" +SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64" + +DEPEND="sys-libs/zlib + dev-libs/boost:1.46 + sci-biology/bamtools" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${P}-src" + +CMAKE_USE_DIR="${S}/src" + +src_prepare() { + sed -i -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \ + -e '1 a find_package(Boost 1.46 COMPONENTS filesystem program_options thread)' \ + -e '1 a find_package(ZLIB)' \ + -e '/add_executable/ a include_directories("/usr/include/bamtools")' \ + src/CMakeLists.txt || die +} diff --git a/sci-biology/express/metadata.xml b/sci-biology/express/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/express/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |