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* sci-biology/fasttree: Version BUmp, #494662Justin Lecher2013-12-201-8/+23
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/fasttree: Version BUmp, #494662Justin Lecher2013-12-204-1/+89
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Cleanup old.Manuel Rüger2013-12-151-24/+1
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* Cleanup old.Manuel Rüger2013-12-153-62/+5
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* Stable for amd64, wrt bug #488414Agostino Sarubbo2013-12-151-16/+16
| | | | (Portage version: 2.2.1/cvs/Linux x86_64, RepoMan options: --include-arches="amd64", signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #488414Agostino Sarubbo2013-12-152-3/+6
| | | | (Portage version: 2.2.1/cvs/Linux x86_64, RepoMan options: --include-arches="amd64", signed Manifest commit with key 7194459F)
* x86 stable, bug #488414Johannes Huber2013-12-071-2/+22
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key F3CFD2BD)
* x86 stable, bug #488414Johannes Huber2013-12-072-3/+6
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key F3CFD2BD)
* sci-biology/samtools: Fix underlinkingJustin Lecher2013-12-061-16/+16
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Fix underlinkingJustin Lecher2013-12-063-3/+9
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Keyword for *-linux, tested by meJustin Lecher2013-12-061-20/+20
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Keyword for *-linux, tested by meJustin Lecher2013-12-066-13/+18
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2013-12-011-21/+3
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2013-12-012-1/+52
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* NMU: Add missing dependency on libxml and ruby20 support. Fix tests see bug ↵Manuel Rüger2013-11-251-12/+4
| | | | | | #489712 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* NMU: Add missing dependency on libxml and ruby20 support. Fix tests see bug ↵Manuel Rüger2013-11-254-3/+79
| | | | | | #489712 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a ↵Johann Schmitz2013-11-241-10/+8
| | | | | | snapshotted version of the lastest version is in the tree (#491816). (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a ↵Johann Schmitz2013-11-243-77/+6
| | | | | | snapshotted version of the lastest version is in the tree (#491816). (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Version bump and reworked ebuild for sci-biology/picard. Uses a snapshotted ↵Johann Schmitz2013-11-241-6/+13
| | | | | | tarball from upstreams 1.103 subversion tag to meet gentoo qa requirements (wrt #491816) (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Version bump and reworked ebuild for sci-biology/picard. Uses a snapshotted ↵Johann Schmitz2013-11-244-3/+215
| | | | | | tarball from upstreams 1.103 subversion tag to meet gentoo qa requirements (wrt #491816) (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* superseeded by sci-biology/allpathslgJustin Lecher2013-11-2011-960/+0
| | | | Upstream wants anybody to move over
* Removing x86 keyword as dependency sci-biology/vaal does not work on x86Patrick Lauer2013-11-131-23/+3
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, unsigned Manifest commit)
* Removing x86 keyword as dependency sci-biology/vaal does not work on x86Patrick Lauer2013-11-133-5/+9
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/vaal: Drop x86 as upstream gives no support and types are not ↵Justin Lecher2013-11-121-10/+20
| | | | | | easily fixable, #458488, #472088 & #488550 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/vaal: Drop x86 as upstream gives no support and types are not ↵Justin Lecher2013-11-125-11/+16
| | | | | | easily fixable, #458488, #472088 & #488550 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Fix tarball and ist checksum, #490360Justin Lecher2013-11-061-16/+16
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Fix tarball and ist checksum, #490360Justin Lecher2013-11-061-1/+4
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/psipred: Version BUmpJustin Lecher2013-11-051-7/+19
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/psipred: Version BUmpJustin Lecher2013-11-053-5/+67
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmpJustin Lecher2013-11-021-15/+17
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmpJustin Lecher2013-11-022-1/+52
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Marked stable on AMD64 based on arch testing by Elijah "Armageddon" El ↵Tony Vroon2013-10-241-2/+12
| | | | | | Lazkani in bug #488414. (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 0xB5058F9A)
* Marked stable on AMD64 based on arch testing by Elijah "Armageddon" El ↵Tony Vroon2013-10-242-3/+7
| | | | | | Lazkani in bug #488414. (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 0xB5058F9A)
* sci-biology/rebase: Version BumpJustin Lecher2013-10-081-6/+18
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2013-10-082-1/+52
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* flower version bumpMikhail Pukhlikov2013-09-221-11/+3
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, unsigned Manifest commit)
* flower version bumpMikhail Pukhlikov2013-09-222-1/+38
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/samtools: Version BUmp, #485450Justin Lecher2013-09-201-5/+18
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Version BUmp, #485450Justin Lecher2013-09-203-1/+251
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/bowtie: Fix location of html files, #484620Justin Lecher2013-09-181-16/+16
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/bowtie: Fix location of html files, #484620Justin Lecher2013-09-182-3/+6
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/biopython: Version BumpJustin Lecher2013-09-171-5/+17
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/biopython: Version BumpJustin Lecher2013-09-172-1/+52
| | | | (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/bamtools: Version Bump, drop old, #482636; thanks Martin ↵Justin Lecher2013-09-171-8/+19
| | | | | | Mokrejš for the patch (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/bamtools: Version Bump, drop old, #482636; thanks Martin ↵Justin Lecher2013-09-173-3/+32
| | | | | | Mokrejš for the patch (Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* NMU: Fix whitespace.Manuel Rüger2013-09-141-2/+2
| | | | (Portage version: 2.2.4/cvs/Linux x86_64, signed Manifest commit with key )
* NMU: Fix whitespace.Manuel Rüger2013-09-142-3/+6
| | | | (Portage version: 2.2.4/cvs/Linux x86_64, signed Manifest commit with key )
* NMU: Version bump. Migrate to ruby-ng eclass. Cleanup old. See bug #475310.Manuel Rüger2013-09-141-21/+7
| | | | (Portage version: 2.2.4/cvs/Linux x86_64, signed Manifest commit with key )
* NMU: Version bump. Migrate to ruby-ng eclass. Cleanup old. See bug #475310.Manuel Rüger2013-09-146-77/+64
| | | | (Portage version: 2.2.4/cvs/Linux x86_64, signed Manifest commit with key )
* Analyze 454 flowgrams (.SFF files) (requested by Martin MOKREJŠ).Sergei Trofimovich2013-09-121-1/+12
| | | | (Portage version: 2.2.1_p20/cvs/Linux x86_64, signed Manifest commit with key 611FF3AA)