diff -urN clipper.orig/clipper/ccp4/Makefile.am clipper/clipper/ccp4/Makefile.am
--- clipper.orig/clipper/ccp4/Makefile.am	2007-11-13 15:16:40.000000000 -0800
+++ clipper/clipper/ccp4/Makefile.am	2007-11-13 17:30:00.000000000 -0800
@@ -12,6 +12,6 @@
 
 library_includedir = $(pkgincludedir)/ccp4
 
-libclipper_ccp4_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@
+libclipper_ccp4_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@ $(CCP4_LIBS)
 
 ####
diff -urN clipper.orig/clipper/core/Makefile.am clipper/clipper/core/Makefile.am
--- clipper.orig/clipper/core/Makefile.am	2007-11-13 15:16:40.000000000 -0800
+++ clipper/clipper/core/Makefile.am	2007-11-13 17:30:00.000000000 -0800
@@ -29,6 +29,6 @@
 
 lib_LTLIBRARIES = libclipper-core.la
 
-libclipper_core_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@
+libclipper_core_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@ $(FFTW_LIBS)
 
 ####
diff -urN clipper.orig/clipper/minimol/Makefile.am clipper/clipper/minimol/Makefile.am
--- clipper.orig/clipper/minimol/Makefile.am	2007-11-13 15:16:40.000000000 -0800
+++ clipper/clipper/minimol/Makefile.am	2007-11-13 19:22:44.000000000 -0800
@@ -24,6 +24,7 @@
 
 library_includedir = $(pkgincludedir)/minimol
 
-libclipper_minimol_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@
+libclipper_minimol_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@ \
+	$(top_builddir)/clipper/mmdb/libclipper-mmdb.la
 
 ####
diff -urN clipper.orig/clipper/mmdb/Makefile.am clipper/clipper/mmdb/Makefile.am
--- clipper.orig/clipper/mmdb/Makefile.am	2007-11-13 15:16:40.000000000 -0800
+++ clipper/clipper/mmdb/Makefile.am	2007-11-13 19:22:15.000000000 -0800
@@ -9,7 +9,8 @@
 
 library_includedir = $(pkgincludedir)/mmdb
 
-libclipper_mmdb_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@
+libclipper_mmdb_la_LDFLAGS = -version-info @CLIPPER_LT_VERSION@ \
+	$(MMDB_LIBS)
 
 EXTRA_DIST = clipper_mmdb_dox