--- OpenFOAM-1.5-src/etc/bashrc	2008-07-09 19:08:57.000000000 +0200
+++ OpenFOAM-1.5/etc/bashrc	2008-07-21 23:07:48.000000000 +0200
@@ -42,9 +42,9 @@
 #
 # Location of FOAM installation
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-foamInstall=$HOME/$WM_PROJECT
+# foamInstall=$HOME/$WM_PROJECT
 # foamInstall=~$WM_PROJECT
-# foamInstall=/usr/local/$WM_PROJECT
+foamInstall=/usr/lib/$WM_PROJECT
 # foamInstall=/opt/$WM_PROJECT
 
 : ${FOAM_INST_DIR:=$foamInstall}; export FOAM_INST_DIR
@@ -59,7 +59,7 @@
 
 # Location of third-party software
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty
+# export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty
 
 
 # Operating System/Platform from Unix or MSWindows
@@ -192,15 +192,15 @@
 
 
 _foamSource $WM_PROJECT_DIR/etc/settings.sh
-_foamSource $WM_PROJECT_DIR/etc/aliases.sh
+# _foamSource $WM_PROJECT_DIR/etc/aliases.sh
 
 
 # Source user setup files for optional packages
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 # _foamSource $WM_PROJECT_DIR/etc/apps/paraview/bashrc
-_foamSource $WM_PROJECT_DIR/etc/apps/paraview3/bashrc
+# _foamSource $WM_PROJECT_DIR/etc/apps/paraview3/bashrc
 # _foamSource $WM_PROJECT_DIR/etc/apps/ensightFoam/bashrc
-_foamSource $WM_PROJECT_DIR/etc/apps/cint/bashrc
+# _foamSource $WM_PROJECT_DIR/etc/apps/cint/bashrc
 
 
 # Again clean environment (path, PATH, MANPATH, LD_LIBRARY_PATH)
--- OpenFOAM-1.5-src/etc/settings.sh	2008-06-27 13:19:25.000000000 +0200
+++ OpenFOAM-1.5/etc/settings.sh	2008-07-21 00:50:00.000000000 +0200
@@ -56,30 +56,30 @@
 export PATH=$WM_PROJECT_DIR/bin:$FOAM_INST_DIR/$WM_ARCH/bin:$PATH
 
 #- Location of the jobControl directory
-export FOAM_JOB_DIR=$FOAM_INST_DIR/jobControl
+export FOAM_JOB_DIR=$HOME/$WM_PROJECT/jobControl
 
 export WM_DIR=$WM_PROJECT_DIR/wmake
 export WM_LINK_LANGUAGE=c++
-export WM_OPTIONS=$WM_ARCH${WM_COMPILER}$WM_PRECISION_OPTION$WM_COMPILE_OPTION
+export WM_OPTIONS=$WM_ARCH${WM_COMPILER}
 export PATH=$WM_DIR:$PATH
 
 export FOAM_SRC=$WM_PROJECT_DIR/src
 export FOAM_LIB=$WM_PROJECT_DIR/lib
-export FOAM_LIBBIN=$FOAM_LIB/$WM_OPTIONS
+export FOAM_LIBBIN=$FOAM_LIB
 _foamAddLib $FOAM_LIBBIN
 
 export FOAM_APP=$WM_PROJECT_DIR/applications
-export FOAM_APPBIN=$WM_PROJECT_DIR/applications/bin/$WM_OPTIONS
+export FOAM_APPBIN=$WM_PROJECT_DIR/applications/bin
 _foamAddPath $FOAM_APPBIN
 
 export FOAM_TUTORIALS=$WM_PROJECT_DIR/tutorials
 export FOAM_UTILITIES=$FOAM_APP/utilities
 export FOAM_SOLVERS=$FOAM_APP/solvers
 
-export FOAM_USER_LIBBIN=$WM_PROJECT_USER_DIR/lib/$WM_OPTIONS
+export FOAM_USER_LIBBIN=$WM_PROJECT_USER_DIR/lib
 _foamAddLib $FOAM_USER_LIBBIN
 
-export FOAM_USER_APPBIN=$WM_PROJECT_USER_DIR/applications/bin/$WM_OPTIONS
+export FOAM_USER_APPBIN=$WM_PROJECT_USER_DIR/applications/bin
 _foamAddPath $FOAM_USER_APPBIN
 
 export FOAM_RUN=$WM_PROJECT_USER_DIR/run
@@ -93,7 +93,7 @@
 # Select compiler installation
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 # WM_COMPILER_INST = OpenFOAM | System
-WM_COMPILER_INST=OpenFOAM
+WM_COMPILER_INST=System
 
 case "$WM_COMPILER_INST" in
 OpenFOAM)
@@ -136,45 +136,47 @@
 
 case "$WM_MPLIB" in
 OPENMPI)
-    mpi_version=openmpi-1.2.6
-    export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version
-    export MPI_ARCH_PATH=$MPI_HOME/platforms/$WM_OPTIONS
-
+    MPI_VERSION=openmpi
+#     export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version
+#     export MPI_ARCH_PATH=$MPI_HOME/platforms/$WM_OPTIONS
+    export MPI_ARCH_PATH=/usr
     # Tell OpenMPI where to find its install directory
     export OPAL_PREFIX=$MPI_ARCH_PATH
 
-    _foamAddLib  $MPI_ARCH_PATH/lib
-    _foamAddPath $MPI_ARCH_PATH/bin
+#     _foamAddLib  $MPI_ARCH_PATH/lib
+#     _foamAddPath $MPI_ARCH_PATH/bin
 
-    export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
-    unset mpi_version
+    export FOAM_MPI_LIBBIN=$FOAM_LIB/$MPI_VERSION
+#     unset mpi_version
     ;;
 
 LAM)
-    mpi_version=lam-7.1.4
-    export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version
-    export MPI_ARCH_PATH=$MPI_HOME/platforms/$WM_OPTIONS
-    export LAMHOME=$WM_THIRD_PARTY_DIR/$mpi_version
+    MPI_VERSION=lam
+#     export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version
+#     export MPI_ARCH_PATH=$MPI_HOME/platforms/$WM_OPTIONS
+    export MPI_ARCH_PATH=/usr
+#     export LAMHOME=$WM_THIRD_PARTY_DIR/$mpi_version
     # note: LAMHOME is deprecated, should probably point to MPI_ARCH_PATH too
 
-    _foamAddLib  $MPI_ARCH_PATH/lib
-    _foamAddPath $MPI_ARCH_PATH/bin
+#     _foamAddLib  $MPI_ARCH_PATH/lib
+#     _foamAddPath $MPI_ARCH_PATH/bin
 
-    export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
-    unset mpi_version
+    export FOAM_MPI_LIBBIN=$FOAM_LIB/$MPI_VERSION
+#     unset mpi_version
     ;;
 
 MPICH)
-    mpi_version=mpich-1.2.4
-    export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version
-    export MPI_ARCH_PATH=$MPI_HOME/platforms/$WM_OPTIONS
+    MPI_VERSION=mpich
+#     export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version
+#     export MPI_ARCH_PATH=$MPI_HOME/platforms/$WM_OPTIONS
+    export MPI_ARCH_PATH=/usr
     export MPICH_ROOT=$MPI_ARCH_PATH
 
-    _foamAddLib  $MPI_ARCH_PATH/lib
-    _foamAddPath $MPI_ARCH_PATH/bin
+#     _foamAddLib  $MPI_ARCH_PATH/lib
+#     _foamAddPath $MPI_ARCH_PATH/bin
 
-    export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
-    unset mpi_version
+    export FOAM_MPI_LIBBIN=$FOAM_LIB/$MPI_VERSION
+#     unset mpi_version
     ;;
 
 MPICH-GM)
--- OpenFOAM-1.5-src/etc/cshrc	2008-07-09 19:09:28.000000000 +0200
+++ OpenFOAM-1.5/etc/cshrc	2008-07-20 22:31:22.000000000 +0200
@@ -58,7 +58,7 @@
 
 # Location of third-party software
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-setenv WM_THIRD_PARTY_DIR $WM_PROJECT_INST_DIR/ThirdParty
+# setenv WM_THIRD_PARTY_DIR $WM_PROJECT_INST_DIR/ThirdParty
 
 
 # Operating System/Platform from Unix or MSWindows
@@ -188,12 +188,12 @@
 alias _foamSource 'if ($?FOAM_VERBOSE && $?prompt) echo "Executing: \!*"; source \!*'
 
 _foamSource $WM_PROJECT_DIR/etc/settings.csh
-_foamSource $WM_PROJECT_DIR/etc/aliases.csh
+# _foamSource $WM_PROJECT_DIR/etc/aliases.csh
 
 # Source user setup files for optional packages
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 # _foamSource $WM_PROJECT_DIR/etc/apps/paraview/cshrc
-_foamSource $WM_PROJECT_DIR/etc/apps/paraview3/cshrc
+# _foamSource $WM_PROJECT_DIR/etc/apps/paraview3/cshrc
 # _foamSource $WM_PROJECT_DIR/etc/apps/ensightFoam/cshrc
 
 
--- OpenFOAM-1.5-src/etc/settings.csh	2008-06-27 13:19:25.000000000 +0200
+++ OpenFOAM-1.5/etc/settings.csh	2008-07-20 23:14:59.000000000 +0200
@@ -39,30 +39,30 @@
 set path=($WM_PROJECT_DIR/bin $FOAM_INST_DIR/$WM_ARCH/bin $path)
 
 #- Location of the jobControl directory
-setenv FOAM_JOB_DIR $FOAM_INST_DIR/jobControl
+setenv FOAM_JOB_DIR $HOME/$WM_PROJECT/jobControl
 
 setenv WM_DIR $WM_PROJECT_DIR/wmake
 setenv WM_LINK_LANGUAGE c++
-setenv WM_OPTIONS $WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_COMPILE_OPTION
+setenv WM_OPTIONS $WM_ARCH$WM_COMPILER
 set path=($WM_DIR $path)
 
 setenv FOAM_SRC $WM_PROJECT_DIR/src
 setenv FOAM_LIB $WM_PROJECT_DIR/lib
-setenv FOAM_LIBBIN $FOAM_LIB/$WM_OPTIONS
+setenv FOAM_LIBBIN $FOAM_LIB
 _foamAddLib $FOAM_LIBBIN
 
 setenv FOAM_APP $WM_PROJECT_DIR/applications
-setenv FOAM_APPBIN $WM_PROJECT_DIR/applications/bin/$WM_OPTIONS
+setenv FOAM_APPBIN $WM_PROJECT_DIR/applications/bin
 _foamAddPath $FOAM_APPBIN
 
 setenv FOAM_TUTORIALS $WM_PROJECT_DIR/tutorials
 setenv FOAM_UTILITIES $FOAM_APP/utilities
 setenv FOAM_SOLVERS $FOAM_APP/solvers
 
-setenv FOAM_USER_LIBBIN $WM_PROJECT_USER_DIR/lib/$WM_OPTIONS
+setenv FOAM_USER_LIBBIN $WM_PROJECT_USER_DIR/lib
 _foamAddLib $FOAM_USER_LIBBIN
 
-setenv FOAM_USER_APPBIN $WM_PROJECT_USER_DIR/applications/bin/$WM_OPTIONS
+setenv FOAM_USER_APPBIN $WM_PROJECT_USER_DIR/applications/bin
 _foamAddPath $FOAM_USER_APPBIN
 
 setenv FOAM_RUN $WM_PROJECT_USER_DIR/run
@@ -76,7 +76,7 @@
 # Select compiler installation
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 # WM_COMPILER_INST = OpenFOAM | System
-set WM_COMPILER_INST=OpenFOAM
+set WM_COMPILER_INST=System
 
 switch ("$WM_COMPILER_INST")
 case OpenFOAM:
@@ -125,45 +125,48 @@
 
 switch ("$WM_MPLIB")
 case OPENMPI:
-    set mpi_version=openmpi-1.2.6
-    setenv MPI_HOME $WM_THIRD_PARTY_DIR/$mpi_version
-    setenv MPI_ARCH_PATH $MPI_HOME/platforms/$WM_OPTIONS
+#     set mpi_version=openmpi-1.2.6
+#     setenv MPI_HOME $WM_THIRD_PARTY_DIR/$mpi_version
+#     setenv MPI_ARCH_PATH $MPI_HOME/platforms/$WM_OPTIONS
+    setenv MPI_ARCH_PATH /usr
 
     # Tell OpenMPI where to find its install directory
     setenv OPAL_PREFIX $MPI_ARCH_PATH
 
-    _foamAddLib  $MPI_ARCH_PATH/lib
-    _foamAddPath $MPI_ARCH_PATH/bin
+#     _foamAddLib  $MPI_ARCH_PATH/lib
+#     _foamAddPath $MPI_ARCH_PATH/bin
 
-    setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
-    unset mpi_version
+    setenv FOAM_MPI_LIBBIN $FOAM_LIB/openmpi
+#     unset mpi_version
     breaksw
 
 case LAM:
-    set mpi_version=lam-7.1.4
-    setenv MPI_HOME $WM_THIRD_PARTY_DIR/$mpi_version
-    setenv MPI_ARCH_PATH $MPI_HOME/platforms/$WM_OPTIONS
-    setenv LAMHOME $WM_THIRD_PARTY_DIR/$mpi_version
+#     set mpi_version=lam-7.1.4
+#     setenv MPI_HOME $WM_THIRD_PARTY_DIR/$mpi_version
+#     setenv MPI_ARCH_PATH $MPI_HOME/platforms/$WM_OPTIONS
+    setenv MPI_ARCH_PATH /usr
+#     setenv LAMHOME $WM_THIRD_PARTY_DIR/$mpi_version
     # note: LAMHOME is deprecated, should probably point to MPI_ARCH_PATH too
 
-    _foamAddLib  $MPI_ARCH_PATH/lib
-    _foamAddPath $MPI_ARCH_PATH/bin
+#     _foamAddLib  $MPI_ARCH_PATH/lib
+#     _foamAddPath $MPI_ARCH_PATH/bin
 
-    setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
-    unset mpi_version
+    setenv FOAM_MPI_LIBBIN $FOAM_LIB/lam
+#     unset mpi_version
     breaksw
 
 case MPICH:
-    set mpi_version=mpich-1.2.4
-    setenv MPI_HOME $WM_THIRD_PARTY_DIR/$mpi_version
-    setenv MPI_ARCH_PATH $MPI_HOME/platforms/$WM_OPTIONS
+#     set mpi_version=mpich-1.2.4
+#     setenv MPI_HOME $WM_THIRD_PARTY_DIR/$mpi_version
+#     setenv MPI_ARCH_PATH $MPI_HOME/platforms/$WM_OPTIONS
+    setenv MPI_ARCH_PATH /usr
     setenv MPICH_ROOT $MPI_ARCH_PATH
 
-    _foamAddLib  $MPI_ARCH_PATH/lib
-    _foamAddPath $MPI_ARCH_PATH/bin
+#     _foamAddLib  $MPI_ARCH_PATH/lib
+#     _foamAddPath $MPI_ARCH_PATH/bin
 
-    setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
-    unset mpi_version
+    setenv FOAM_MPI_LIBBIN $FOAM_LIB/mpich
+#     unset mpi_version
     breaksw
 
 case MPICH-GM:
--- OpenFOAM-1.5-src/wmake/rules/General/flex++	2008-05-01 16:16:40.000000000 +0200
+++ OpenFOAM-1.5/wmake/rules/General/flex++	2008-07-22 16:18:41.000000000 +0200
@@ -1,6 +1,6 @@
 .SUFFIXES: .L
 
-Ltoo = flex++ -f $$SOURCE ; mv lex.yy.cc $*.C ; $(CC) $(c++FLAGS) -c $*.C -o $@ 
+Ltoo = flex --c++ $$SOURCE ; mv lex.yy.cc $*.C ; $(CC) $(c++FLAGS) -c $*.C -o $@ 
 
 .L.dep:
 	$(MAKE_DEP)
--- OpenFOAM-1.5-src/wmake/Makefile	2008-06-27 13:19:31.000000000 +0200
+++ OpenFOAM-1.5/wmake/Makefile	2008-07-20 23:06:27.000000000 +0200
@@ -56,7 +56,7 @@
 
 LIB_SRC            = $(WM_PROJECT_DIR)/src
 LIB_DIR            = $(WM_PROJECT_DIR)/lib
-LIB_WM_OPTIONS_DIR = $(LIB_DIR)/$(WM_OPTIONS)
+LIB_WM_OPTIONS_DIR = $(LIB_DIR)
 OBJECTS_DIR        = $(MAKE_DIR)/$(WM_OPTIONS)
 CLASSES_DIR        = $(MAKE_DIR)/classes
 
--- OpenFOAM-1.5-src/bin/paraFoam	2008-07-03 18:14:43.000000000 +0200
+++ OpenFOAM-1.5/bin/paraFoam	2008-07-22 15:23:24.000000000 +0200
@@ -77,8 +77,8 @@
    [ -s "$parentDir/$check" ] || usage "file does not exist:  '$parentDir/$check'"
 done
 
-#caseFile="$caseName.foam"
-caseFile="$caseName.OpenFOAM"
+caseFile="$caseName.foam"
+# caseFile="$caseName.OpenFOAM"
 
 case "$ParaView_VERSION" in
 2*)
@@ -96,7 +96,7 @@
 *)
    # Clean up on termination and on Ctrl-C
    trap "rm -f $caseFile 2>/dev/null; exit 0" EXIT TERM INT
-   touch $caseFile
+   ln system/controlDict $caseFile
    paraview --data=$caseFile
    ;;
 
--- OpenFOAM-1.5-src/src/decompositionAgglomeration/decompositionMethods/Make/options	2008-06-09 16:22:09.000000000 +0200
+++ OpenFOAM-1.5/src/decompositionAgglomeration/decompositionMethods/Make/options	2008-07-20 22:19:30.000000000 +0200
@@ -1,6 +1,5 @@
 EXE_INC = \
-    -I$(WM_THIRD_PARTY_DIR)/metis-5.0pre2/include
+    -I/usr/include/metis
 
 LIB_LIBS = \
-    -lmetis \
-    -lGKlib
+    -lmetis
--- OpenFOAM-1.5-src/src/decompositionAgglomeration/parMetisDecomp/Make/options	2008-06-09 16:23:55.000000000 +0200
+++ OpenFOAM-1.5/src/decompositionAgglomeration/parMetisDecomp/Make/options	2008-07-20 22:24:04.000000000 +0200
@@ -2,11 +2,11 @@
 
 EXE_INC = \
     $(PFLAGS) $(PINC) \
-    -I$(WM_THIRD_PARTY_DIR)/ParMetis-3.1/ParMETISLib \
-    -I$(WM_THIRD_PARTY_DIR)/ParMetis-3.1 \
+    -I/usr/include/parmetis \
+    -I/usr/include/metis \
     -I../decompositionMethods/lnInclude
 
 LIB_LIBS = \
     -L$(FOAM_MPI_LIBBIN) \
-    -lmetis-parmetis \
+    -lmetis \
     -lparmetis
--- OpenFOAM-1.5-src/src/decompositionAgglomeration/MGridGenGamgAgglomeration/Make/options	2008-06-09 16:22:37.000000000 +0200
+++ OpenFOAM-1.5/src/decompositionAgglomeration/MGridGenGamgAgglomeration/Make/options	2008-07-21 20:45:42.000000000 +0200
@@ -1,5 +1,3 @@
-ParMGridGen = $(WM_THIRD_PARTY_DIR)/ParMGridGen-1.0
-
 TYPE_REAL=
 #if defined(SP)
 TYPE_REAL=-DTYPE_REAL
@@ -7,9 +5,9 @@
 
 EXE_INC = \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
-    -I$(ParMGridGen)/MGridGen/Lib/lnInclude \
-    -I$(ParMGridGen)/MGridGen/IMlib/lnInclude \
+    -I/usr/include/mgridgen \
     $(TYPE_REAL)
 
 LIB_LIBS = \
+    -lIMlib \
     -lMGridGen
--- OpenFOAM-1.5-src/src/autoMesh/autoHexMesh/autoHexMeshDriver/autoRefineDriver.C	2008-07-09 10:43:41.000000000 +0200
+++ OpenFOAM-1.5/src/autoMesh/autoHexMesh/autoHexMeshDriver/autoRefineDriver.C	2008-07-21 22:02:55.000000000 +0200
@@ -240,6 +240,7 @@
         // ~~~~~~~~~~~~~~~~~~~~~~~~~
         // Only look at surface intersections (minLevel and surface curvature),
         // do not do internal refinement (refinementShells)
+PtrList<featureEdgeMesh> dummy(0);
 
         labelList candidateCells
         (
@@ -248,7 +249,8 @@
                 refineParams.keepPoints()[0],
                 refineParams.curvature(),
 
-                PtrList<featureEdgeMesh>(0),    // dummy featureMeshes;
+//                PtrList<featureEdgeMesh>(0),    // dummy featureMeshes;
+dummy, //dummy featureMeshes;
                 labelList(0),                   // dummy featureLevels;
 
                 false,              // featureRefinement
@@ -382,6 +384,8 @@
             << "----------------------------" << nl
             << endl;
 
+PtrList<featureEdgeMesh> dummy(0);
+
         labelList candidateCells
         (
             meshRefiner_.refineCandidates
@@ -389,7 +393,8 @@
                 refineParams.keepPoints()[0],
                 refineParams.curvature(),
 
-                PtrList<featureEdgeMesh>(0),    // dummy featureMeshes;
+//                PtrList<featureEdgeMesh>(0),    // dummy featureMeshes;
+dummy, // dummy featureMeshes;
                 labelList(0),                   // dummy featureLevels;
 
                 false,              // featureRefinement