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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.5 2015/06/13 19:19:59 dilfridge Exp $
EAPI="5"
inherit perl-module git-2
SUBPROJECTS="+db +network +run"
DESCRIPTION="Perl tools for bioinformatics - Core modules"
HOMEPAGE="http://www.bioperl.org/"
SRC_URI=""
EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git
https://github.com/${PN}/${PN}-live.git"
LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS=""
IUSE="-minimal graphviz ${SUBPROJECTS}"
CDEPEND="
dev-perl/Data-Stag
dev-perl/libwww-perl
!minimal? (
dev-perl/Ace
dev-perl/Bio-ASN1-EntrezGene
dev-perl/Spreadsheet-ParseExcel
dev-perl/Spreadsheet-WriteExcel
>=dev-perl/XML-SAX-0.15
dev-perl/Graph
dev-perl/SOAP-Lite
dev-perl/Array-Compare
dev-perl/SVG
dev-perl/XML-Simple
dev-perl/XML-Parser
dev-perl/XML-Twig
>=dev-perl/HTML-Parser-3.60
>=dev-perl/XML-Writer-0.4
dev-perl/Clone
dev-perl/XML-DOM
dev-perl/set-scalar
dev-perl/XML-XPath
dev-perl/XML-DOM-XPath
dev-perl/Algorithm-Munkres
dev-perl/Data-Stag
dev-perl/Math-Random
dev-perl/PostScript
dev-perl/Convert-Binary-C
dev-perl/SVG-Graph
)
graphviz? ( dev-perl/GraphViz )"
DEPEND="dev-perl/Module-Build
${CDEPEND}"
RDEPEND="${CDEPEND}"
PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
db? ( >=sci-biology/bioperl-db-${PV} )
network? ( >=sci-biology/bioperl-network-${PV} )
run? ( >=sci-biology/bioperl-run-${PV} )"
S="${WORKDIR}/BioPerl-${PV}"
src_configure() {
sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
-e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" \
-e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" \
|| die
if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
perl-module_src_configure
}
src_install() {
mydoc="AUTHORS BUGS FAQ"
perl-module_src_install
}
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