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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<longdescription lang="en">
SHOGUN - is a new machine learning toolbox with focus on large
scale kernel methods and especially on Support Vector Machines
(SVM) with focus to bioinformatics. It provides a generic SVM
object interfacing to several different SVM implementations. Each
of the SVMs can be combined with a variety of the many kernels
implemented. It can deal with weighted linear combination of a
number of sub-kernels, each of which not necessarily working on the
same domain, where an optimal sub-kernel weighting can be learned
using Multiple Kernel Learning. Apart from SVM 2-class
classification and regression problems, a number of linear methods
like Linear Discriminant Analysis (LDA), Linear Programming Machine
(LPM), (Kernel) Perceptrons and also algorithms to train hidden
markov models are implemented. The input feature-objects can be
dense, sparse or strings and of type int/short/double/char and can
be converted into different feature types. Chains of preprocessors
(e.g. substracting the mean) can be attached to each feature object
allowing for on-the-fly pre-processing.
</longdescription>
<use>
<flag name="arpack">Enable support for <pkg>sci-libs/arpack</pkg></flag>
<flag name="glpk">Enable support for <pkg>sci-mathematics/glpk</pkg></flag>
<flag name="json">Enable support for parsing JSON format</flag>
<flag name="lpsolve">Enable support for Linear Programming Solver</flag>
<flag name="R">Enable support for <pkg>dev-lang/R</pkg></flag>
<flag name="octave">Enable support for <pkg>sci-mathematics/octave</pkg></flag>
<flag name="snappy">Enable support for snappy compression</flag>
<flag name="superlu">Enable support for <pkg>sci-libs/superlu</pkg></flag>
</use>
</pkgmetadata>
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