Version bump

Package-Manager: portage-2.2_rc30/cvs/Linux x86_64

3 files changed, 82 insertions, 2 deletions

diff --git a/dev-java/biojava/ChangeLog b/dev-java/biojava/ChangeLog
index e3d71481800e..0dc69d1105bd 100644
--- a/dev-java/biojava/ChangeLog
+++ b/dev-java/biojava/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for dev-java/biojava
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-java/biojava/ChangeLog,v 1.2 2009/02/07 18:48:17 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-java/biojava/ChangeLog,v 1.3 2009/07/10 19:11:51 weaver Exp $
+
+*biojava-1.7 (10 Jul 2009)
+
+  10 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +biojava-1.7.ebuild:
+  Version bump
 
   07 Feb 2009; weaver <weaver@gentoo.org> metadata.xml:
   Assume ownership
diff --git a/dev-java/biojava/Manifest b/dev-java/biojava/Manifest
index f9f13bd4ab32..2ccddbb6d488 100644
--- a/dev-java/biojava/Manifest
+++ b/dev-java/biojava/Manifest
@@ -1,4 +1,6 @@
 DIST biojava-1.6-all.jar 24571007 RMD160 b3e64f00406d8d075c0074273fb1420f28eea024 SHA1 16b01300e56189ad3ce8a5dfc74ecae70b195174 SHA256 2d10334fe6022d1b64219505ba4d2a32027ab7218d775878506d3e7c00f6ce7e
+DIST biojava-1.7-all.jar 28062592 RMD160 7abc6681c9bee0f667cec3a653f5a293d1695368 SHA1 949c7af1ff4e3af7b30e2d36551dd1aa2dbe33c9 SHA256 5c5e7fc66bc79a07494fb7d935164ec2aab50dc2effb7644f89bfa4fc907bb3f
 EBUILD biojava-1.6.ebuild 1998 RMD160 a481aff21a8a797c0b0b68433923262bcaf0b30e SHA1 700172b7d196d605747d46fd4e3041bc2794c3b6 SHA256 1718343a257764cd22a481821024e0cc86dfe18c1d6e592b5e3d0f266d94f140
-MISC ChangeLog 522 RMD160 e66f684989cc3ed217373f9e57276b1c52b10db6 SHA1 ea9ea1653abdc57f8218199ab52af92e70bdcb10 SHA256 8a9c4bb0af9b039b3b4b18f36f5df5ef4058c73826405eeba166bf305fc33a21
+EBUILD biojava-1.7.ebuild 2015 RMD160 e0dd65316a609064f553ad379d03e089329dd04e SHA1 32b922ecf8638b3932b08cc7d1e12daaf0ebb7ba SHA256 f45c55557b4ad8330096ed4d8a4d8d5b3ec951e72a0420cdc8912c7d09a18d5a
+MISC ChangeLog 637 RMD160 fd3efe9e91b977f2f807299456c1555a7ccd086c SHA1 074986ae3a189069b8c0d5dc8ba7e0afa42a6b63 SHA256 838970468da4a39af3e8b63206518152c68874dc650a136a8df435f44901dc47
 MISC metadata.xml 253 RMD160 44d0b654f57df30cc178bcca3565b2b29803cc3a SHA1 e03427a204c21f4bf7c70e56fa687b3369cd45c1 SHA256 5bc386090b16e0afb2543253f0ca7608dddf4712e8be8ac237e69608251e68d3
diff --git a/dev-java/biojava/biojava-1.7.ebuild b/dev-java/biojava/biojava-1.7.ebuild
new file mode 100644
index 000000000000..e3bcd9cb729c
--- /dev/null
+++ b/dev-java/biojava/biojava-1.7.ebuild
@@ -0,0 +1,73 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/dev-java/biojava/biojava-1.7.ebuild,v 1.1 2009/07/10 19:11:51 weaver Exp $
+
+# TODO:
+# -Fix javadoc generation OutOfMemoryError
+# -Add launchers for 2 apps in biojava-apps.jar
+# -Decide on demo packaging. (Whether to install its jar as done or sources by examples USE flag)
+
+EAPI=2
+
+#JAVA_PKG_IUSE="doc source test"
+JAVA_PKG_IUSE="source test"
+
+inherit eutils java-pkg-2 java-ant-2
+
+DESCRIPTION="A Java framework for processing biological data"
+HOMEPAGE="http://biojava.org"
+SRC_URI="http://www.biojava.org/download/bj17/all/${P}-all.jar"
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+COMMON_DEPEND="dev-java/jgrapht:0
+	dev-java/commons-cli:1
+	dev-java/commons-dbcp:0
+	dev-java/commons-pool:0
+	dev-java/commons-collections:0
+	dev-java/bytecode:0"
+
+RDEPEND=">=virtual/jre-1.5
+	${COMMON_DEPEND}"
+DEPEND=">=virtual/jdk-1.5
+	app-arch/unzip
+	${COMMON_DEPEND}
+	test?
+	(
+		dev-java/junit:4
+		dev-java/ant-junit4
+	)"
+
+S="${WORKDIR}/biojava-${PV}"
+
+JAVA_ANT_IGNORE_SYSTEM_CLASSES="true"
+
+src_prepare() {
+	einfo "Removing bundled jars..."
+	find . -name "*.jar" -print -delete
+	java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar
+	java-pkg_jar-from commons-cli-1
+	java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar
+	java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar
+	java-pkg_jar-from bytecode
+}
+
+src_compile() {
+	#ANT_OPTS="${ANT_OPTS} -Xmx512m"
+	eant package-biojava package-biojava package-demos package-apps #$(use_doc javadocs-all)
+}
+
+src_install() {
+	java-pkg_newjar ant-build/biojava.jar ${PN}.jar
+	java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar
+	java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar
+	#use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos}
+	use source && java-pkg_dosrc {src,apps,demos}/org
+}
+
+src_test() {
+	java-pkg_jar-from junit-4 junit.jar junit-4.4.jar
+	ANT_TASKS="ant-junit4" eant runtests
+}