Version Bump

Package-Manager: portage-2.2.0_alpha35/cvs/Linux x86_64

5 files changed, 74 insertions, 15 deletions

diff --git a/sci-biology/psipred/ChangeLog b/sci-biology/psipred/ChangeLog
index 56dafc64ffbd..a71403d952fa 100644
--- a/sci-biology/psipred/ChangeLog
+++ b/sci-biology/psipred/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/psipred
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.4 2010/10/16 08:50:49 jlec Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.5 2011/05/24 12:18:04 jlec Exp $
+
+*psipred-3.2.1 (24 May 2011)
+
+  24 May 2011; Justin Lecher <jlec@gentoo.org> psipred-3.1.ebuild,
+  psipred-3.2.ebuild, +psipred-3.2.1.ebuild:
+  Version Bump
 
 *psipred-3.2 (16 Oct 2010)
 
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest
index 7c6263f84206..3ac82d35ff12 100644
--- a/sci-biology/psipred/Manifest
+++ b/sci-biology/psipred/Manifest
@@ -10,14 +10,16 @@ AUX 3.1-path.patch 1128 RMD160 2281327e849146a6dc38f035501727e0a30d2d59 SHA1 579
 AUX 3.2-fgets.patch 427 RMD160 ed804cd83bbf30b99b59bfa01854a335d8c0ca0b SHA1 9f322d30af56b1aeabbb1e532e52eaf2bace3293 SHA256 95d68881c502c567025eb5e74fcd545bf012ded48ab2731aa70827f0ff449696
 DIST psipred31.tar.gz 746797 RMD160 921f0a0cc8b88a0d8deeaccf05231447122f4237 SHA1 f4ce00879a3dd787df9015636184d777e54d5905 SHA256 2150696cae281bc942a18fc5f1e2057ed70cb6ee7b492c9594cbd99b8f6987dd
 DIST psipred32.tar.gz 747120 RMD160 4416abb730428e87ee766d1bf16409e9d5f3f219 SHA1 496be261ed522dc927d4ce2ad82d23977571265f SHA256 0775b0f07df87b2afd4989a378fc9b47f462507a264aaf2d56dd0243d9d00343
-EBUILD psipred-3.1.ebuild 1270 RMD160 7176556ecb96d45730c3af2f633c32df5b710afa SHA1 d71445cbf8b8697eec3c2b7bb77e4b309c465fcd SHA256 258864043648ffeff37ff370693b5e9272c2611de3523c1443e6f044eee7046c
-EBUILD psipred-3.2.ebuild 1266 RMD160 6995e09fdf7bb8410545dfd4936cb6a5b548fe04 SHA1 7fdd58409aac37b9f52d873468ff8ba0a444a1e6 SHA256 096f80c485417e3b3ab57f04601755fc752777e3fcaf44895a917b8defd78beb
-MISC ChangeLog 1118 RMD160 f8293583268f2ef73b65b8cdc048b55a73d71688 SHA1 359d1484824e6c8630a84c6ceed15464e356e4cf SHA256 ae8fc0bab0896b13eda247c30d0b3c07aa8b00976dbb4d19254991f721eeacbc
+DIST psipred321.tar.gz 747151 RMD160 47bdbe86f1cf698b01e500101469a3acb5ce02fd SHA1 729f253013d5f075f67fab07d1bf013c1f202769 SHA256 5e88f2402e333be401b3022937b0167a33203f6289a84dd344941546f550f1f8
+EBUILD psipred-3.1.ebuild 1268 RMD160 247809dd4256bc85efa3e0eaa1b0a1b91f2fbdd9 SHA1 ca3c44cfd6bafae148d9dd6ce14eaf5a2bea6c38 SHA256 939a6841f67a59a17585381a930973ac57e17c234a6d67de8a951d4e7b57712e
+EBUILD psipred-3.2.1.ebuild 1149 RMD160 72d26c5f188aa5597a9daa4f18d0d130e60e783d SHA1 1654c2f1edb570c7eff442922fd1b02de0ed715e SHA256 5a17f7935d280fe41954d4e5b806a152fb7ea579fa2eefaf3702a5cfe5b85728
+EBUILD psipred-3.2.ebuild 1264 RMD160 93223f11f9f6f3a133b378b266d58193dd20dd13 SHA1 fdbc9b18934f5107b6022e7dcba8122fd9873bfa SHA256 02205a927aedd70a33350ecfb155a387651ddebd6322d3755c8fbdc00ece4d94
+MISC ChangeLog 1276 RMD160 a3b46ae4938354cf22c335f97606b086faa1fb01 SHA1 39c5ecd73005cb2754d729ab5014d978e3eeb16f SHA256 3e1736a369d4d2408231ba8a4fed6f70548978ce8559920f78f2044cb5f761ae
 MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.16 (GNU/Linux)
+Version: GnuPG v2.0.17 (GNU/Linux)
 
-iEYEARECAAYFAky5Z2sACgkQgAnW8HDreRbUtgCfQ3yRusnBXQhDDAwejGLkpVMr
-HrwAn1j1KVIWNX0283AJX6EkPq3Patc0
-=mTw5
+iEYEARECAAYFAk3bogIACgkQgAnW8HDreRYD5QCeLJW/jt3q1CYu1nZhXmDqjkRT
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diff --git a/sci-biology/psipred/psipred-3.1.ebuild b/sci-biology/psipred/psipred-3.1.ebuild
index e1bcf7908809..481e80e7ffa5 100644
--- a/sci-biology/psipred/psipred-3.1.ebuild
+++ b/sci-biology/psipred/psipred-3.1.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.1.ebuild,v 1.2 2010/10/16 08:50:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.1.ebuild,v 1.3 2011/05/24 12:18:04 jlec Exp $
 
-EAPI="3"
+EAPI=3
 
 inherit eutils prefix toolchain-funcs versionator
 
diff --git a/sci-biology/psipred/psipred-3.2.1.ebuild b/sci-biology/psipred/psipred-3.2.1.ebuild
new file mode 100644
index 000000000000..53e1af6f902e
--- /dev/null
+++ b/sci-biology/psipred/psipred-3.2.1.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.1.ebuild,v 1.1 2011/05/24 12:18:04 jlec Exp $
+
+EAPI=4
+
+inherit eutils prefix toolchain-funcs versionator
+
+MY_P="${PN}$(delete_all_version_separators)"
+
+DESCRIPTION="Protein Secondary Structure Prediction"
+HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
+SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
+
+LICENSE="psipred"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+	sci-biology/ncbi-tools
+	sci-biology/ncbi-tools++"
+DEPEND=""
+
+S="${WORKDIR}"
+
+src_prepare() {
+	rm -f bin/*
+	epatch \
+		"${FILESDIR}"/3.1-Makefile.patch \
+		"${FILESDIR}"/3.1-path.patch \
+		"${FILESDIR}"/3.2-fgets.patch
+	eprefixify runpsipred*
+}
+
+src_compile() {
+	emake -C src CC=$(tc-getCC)
+}
+
+src_install() {
+	emake -C src DESTDIR="${D}" install
+	dobin runpsipred* bin/* BLAST+/runpsipred*
+	insinto /usr/share/${PN}
+	doins -r data
+	dodoc README
+}
+
+pkg_postinst() {
+	elog "Please use the update_blastdb.pl in order to"
+	elog "maintain your own local blastdb"
+}
diff --git a/sci-biology/psipred/psipred-3.2.ebuild b/sci-biology/psipred/psipred-3.2.ebuild
index 566dc1632ede..4d698781252e 100644
--- a/sci-biology/psipred/psipred-3.2.ebuild
+++ b/sci-biology/psipred/psipred-3.2.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.ebuild,v 1.1 2010/10/16 08:50:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.ebuild,v 1.2 2011/05/24 12:18:04 jlec Exp $
 
-EAPI="3"
+EAPI=3
 
 inherit eutils prefix toolchain-funcs versionator