From 115c0d9b3201c403c6e4546dc193c377496aaf0d Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Tue, 24 May 2011 12:18:04 +0000 Subject: Version Bump Package-Manager: portage-2.2.0_alpha35/cvs/Linux x86_64 --- sci-biology/psipred/ChangeLog | 10 +++++-- sci-biology/psipred/Manifest | 16 +++++----- sci-biology/psipred/psipred-3.1.ebuild | 6 ++-- sci-biology/psipred/psipred-3.2.1.ebuild | 51 ++++++++++++++++++++++++++++++++ sci-biology/psipred/psipred-3.2.ebuild | 6 ++-- 5 files changed, 74 insertions(+), 15 deletions(-) create mode 100644 sci-biology/psipred/psipred-3.2.1.ebuild (limited to 'sci-biology/psipred') diff --git a/sci-biology/psipred/ChangeLog b/sci-biology/psipred/ChangeLog index 56dafc64ffbd..a71403d952fa 100644 --- a/sci-biology/psipred/ChangeLog +++ b/sci-biology/psipred/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/psipred -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.4 2010/10/16 08:50:49 jlec Exp $ +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.5 2011/05/24 12:18:04 jlec Exp $ + +*psipred-3.2.1 (24 May 2011) + + 24 May 2011; Justin Lecher psipred-3.1.ebuild, + psipred-3.2.ebuild, +psipred-3.2.1.ebuild: + Version Bump *psipred-3.2 (16 Oct 2010) diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest index 7c6263f84206..3ac82d35ff12 100644 --- a/sci-biology/psipred/Manifest +++ b/sci-biology/psipred/Manifest @@ -10,14 +10,16 @@ AUX 3.1-path.patch 1128 RMD160 2281327e849146a6dc38f035501727e0a30d2d59 SHA1 579 AUX 3.2-fgets.patch 427 RMD160 ed804cd83bbf30b99b59bfa01854a335d8c0ca0b SHA1 9f322d30af56b1aeabbb1e532e52eaf2bace3293 SHA256 95d68881c502c567025eb5e74fcd545bf012ded48ab2731aa70827f0ff449696 DIST psipred31.tar.gz 746797 RMD160 921f0a0cc8b88a0d8deeaccf05231447122f4237 SHA1 f4ce00879a3dd787df9015636184d777e54d5905 SHA256 2150696cae281bc942a18fc5f1e2057ed70cb6ee7b492c9594cbd99b8f6987dd DIST psipred32.tar.gz 747120 RMD160 4416abb730428e87ee766d1bf16409e9d5f3f219 SHA1 496be261ed522dc927d4ce2ad82d23977571265f SHA256 0775b0f07df87b2afd4989a378fc9b47f462507a264aaf2d56dd0243d9d00343 -EBUILD psipred-3.1.ebuild 1270 RMD160 7176556ecb96d45730c3af2f633c32df5b710afa SHA1 d71445cbf8b8697eec3c2b7bb77e4b309c465fcd SHA256 258864043648ffeff37ff370693b5e9272c2611de3523c1443e6f044eee7046c -EBUILD psipred-3.2.ebuild 1266 RMD160 6995e09fdf7bb8410545dfd4936cb6a5b548fe04 SHA1 7fdd58409aac37b9f52d873468ff8ba0a444a1e6 SHA256 096f80c485417e3b3ab57f04601755fc752777e3fcaf44895a917b8defd78beb -MISC ChangeLog 1118 RMD160 f8293583268f2ef73b65b8cdc048b55a73d71688 SHA1 359d1484824e6c8630a84c6ceed15464e356e4cf SHA256 ae8fc0bab0896b13eda247c30d0b3c07aa8b00976dbb4d19254991f721eeacbc +DIST psipred321.tar.gz 747151 RMD160 47bdbe86f1cf698b01e500101469a3acb5ce02fd SHA1 729f253013d5f075f67fab07d1bf013c1f202769 SHA256 5e88f2402e333be401b3022937b0167a33203f6289a84dd344941546f550f1f8 +EBUILD psipred-3.1.ebuild 1268 RMD160 247809dd4256bc85efa3e0eaa1b0a1b91f2fbdd9 SHA1 ca3c44cfd6bafae148d9dd6ce14eaf5a2bea6c38 SHA256 939a6841f67a59a17585381a930973ac57e17c234a6d67de8a951d4e7b57712e +EBUILD psipred-3.2.1.ebuild 1149 RMD160 72d26c5f188aa5597a9daa4f18d0d130e60e783d SHA1 1654c2f1edb570c7eff442922fd1b02de0ed715e SHA256 5a17f7935d280fe41954d4e5b806a152fb7ea579fa2eefaf3702a5cfe5b85728 +EBUILD psipred-3.2.ebuild 1264 RMD160 93223f11f9f6f3a133b378b266d58193dd20dd13 SHA1 fdbc9b18934f5107b6022e7dcba8122fd9873bfa SHA256 02205a927aedd70a33350ecfb155a387651ddebd6322d3755c8fbdc00ece4d94 +MISC ChangeLog 1276 RMD160 a3b46ae4938354cf22c335f97606b086faa1fb01 SHA1 39c5ecd73005cb2754d729ab5014d978e3eeb16f SHA256 3e1736a369d4d2408231ba8a4fed6f70548978ce8559920f78f2044cb5f761ae MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.16 (GNU/Linux) +Version: GnuPG v2.0.17 (GNU/Linux) -iEYEARECAAYFAky5Z2sACgkQgAnW8HDreRbUtgCfQ3yRusnBXQhDDAwejGLkpVMr -HrwAn1j1KVIWNX0283AJX6EkPq3Patc0 -=mTw5 +iEYEARECAAYFAk3bogIACgkQgAnW8HDreRYD5QCeLJW/jt3q1CYu1nZhXmDqjkRT +jkUAoMbENTwkXxF2YmILrcF+LuTHcw/a +=wYiO -----END PGP SIGNATURE----- diff --git a/sci-biology/psipred/psipred-3.1.ebuild b/sci-biology/psipred/psipred-3.1.ebuild index e1bcf7908809..481e80e7ffa5 100644 --- a/sci-biology/psipred/psipred-3.1.ebuild +++ b/sci-biology/psipred/psipred-3.1.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.1.ebuild,v 1.2 2010/10/16 08:50:49 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.1.ebuild,v 1.3 2011/05/24 12:18:04 jlec Exp $ -EAPI="3" +EAPI=3 inherit eutils prefix toolchain-funcs versionator diff --git a/sci-biology/psipred/psipred-3.2.1.ebuild b/sci-biology/psipred/psipred-3.2.1.ebuild new file mode 100644 index 000000000000..53e1af6f902e --- /dev/null +++ b/sci-biology/psipred/psipred-3.2.1.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.1.ebuild,v 1.1 2011/05/24 12:18:04 jlec Exp $ + +EAPI=4 + +inherit eutils prefix toolchain-funcs versionator + +MY_P="${PN}$(delete_all_version_separators)" + +DESCRIPTION="Protein Secondary Structure Prediction" +HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" +SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz" + +LICENSE="psipred" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + sci-biology/ncbi-tools + sci-biology/ncbi-tools++" +DEPEND="" + +S="${WORKDIR}" + +src_prepare() { + rm -f bin/* + epatch \ + "${FILESDIR}"/3.1-Makefile.patch \ + "${FILESDIR}"/3.1-path.patch \ + "${FILESDIR}"/3.2-fgets.patch + eprefixify runpsipred* +} + +src_compile() { + emake -C src CC=$(tc-getCC) +} + +src_install() { + emake -C src DESTDIR="${D}" install + dobin runpsipred* bin/* BLAST+/runpsipred* + insinto /usr/share/${PN} + doins -r data + dodoc README +} + +pkg_postinst() { + elog "Please use the update_blastdb.pl in order to" + elog "maintain your own local blastdb" +} diff --git a/sci-biology/psipred/psipred-3.2.ebuild b/sci-biology/psipred/psipred-3.2.ebuild index 566dc1632ede..4d698781252e 100644 --- a/sci-biology/psipred/psipred-3.2.ebuild +++ b/sci-biology/psipred/psipred-3.2.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.ebuild,v 1.1 2010/10/16 08:50:49 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.ebuild,v 1.2 2011/05/24 12:18:04 jlec Exp $ -EAPI="3" +EAPI=3 inherit eutils prefix toolchain-funcs versionator -- cgit v1.2.3-65-gdbad