# ChangeLog for dev-lang/R # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.134 2008/09/06 21:39:55 dertobi123 Exp $ 06 Sep 2008; Tobias Scherbaum R-2.7.1.ebuild: ppc stable, bug #235822 02 Sep 2008; Tobias Heinlein R-2.7.1.ebuild: amd64 stable wrt security bug #235822 02 Sep 2008; Jeroen Roovers R-2.7.1.ebuild: Stable for HPPA (bug #235822). 01 Sep 2008; Raúl Porcel R-2.7.1.ebuild: alpha/ia64/x86 stable wrt #235822 01 Sep 2008; Markus Rothe R-2.7.1.ebuild: Stable on ppc64; bug #235822 31 Aug 2008; Ferris McCormick R-2.7.1.ebuild: Sparc stable, security Bug #235822. 31 Aug 2008; Markus Dittrich files/R-javareconf.patch: Re-added R-javareconf.patch description. 31 Aug 2008; Markus Dittrich files/R-javareconf.patch: Added further enhancements to R-javareconf.patch (see bug #235822). *R-2.7.2 (27 Aug 2008) 27 Aug 2008; Markus Dittrich +files/R-javareconf.patch, +files/R-2.7.1-test-fix.patch, -2.6.1-r1.ebuild, -R-2.6.2.ebuild, -R-2.7.0.ebuild, R-2.7.1.ebuild, +R-2.7.2.ebuild: Added patch from Debian to fix insecure tempfile handling in javareconf (fixes bug #235822). NOTE: R-2.2.1-r1.ebuild is not vulnerable since it does not include the javereconf script. Also removed old ebuilds and removed two tests from the test suite since they fail with portage. 18 Jul 2008; Markus Dittrich R-2.7.1.ebuild: Added missing cairo use flag (see bug #231970). *R-2.7.1 (10 Jul 2008) 10 Jul 2008; Sébastien Fabbro +R-2.7.1.ebuild: Version bump. Removed std=gnu99, added upstream. 10 May 2008; Markus Dittrich R-2.7.0.ebuild: Fixed improper binary path in Rscript (see bug #221061). *R-2.7.0 (23 Apr 2008) 23 Apr 2008; Markus Dittrich +R-2.7.0.ebuild: Version bump. 15 Apr 2008; Raúl Porcel R-2.6.1-r1.ebuild: alpha stable 26 Feb 2008; Sébastien Fabbro +R-2.2.1-r1.ebuild: Re-add old R-2.2.1-r1.ebuild for old rpy dependency until rpy-1.0.1 is stable 26 Feb 2008; Sébastien Fabbro -R-2.2.1-r1.ebuild, -R-2.6.1.ebuild, R-2.6.1-r1.ebuild, R-2.6.2.ebuild: Removed older versions, and duplicate license files (see bug #211534) 19 Feb 2008; Brent Baude R-2.6.1-r1.ebuild: stable ppc64, bug 210229 19 Feb 2008; Markus Dittrich R-2.6.1-r1.ebuild: Added -mminimal-toc on ppc64 to fix linking errors (see bug #210229). 17 Feb 2008; Raúl Porcel R-2.6.1-r1.ebuild: ia64 stable wrt #210229 16 Feb 2008; Markus Meier R-2.6.1-r1.ebuild: x86 stable, bug #210229 15 Feb 2008; nixnut R-2.6.1-r1.ebuild: Stable on ppc wrt bug 210229 15 Feb 2008; Jeroen Roovers R-2.6.1-r1.ebuild: Stable for HPPA (bug #210229). 15 Feb 2008; Santiago M. Mola R-2.6.1-r1.ebuild: amd64 stable wrt bug #210229 15 Feb 2008; Ferris McCormick R-2.6.1-r1.ebuild: Sparc stable, Bug #210229. Working since 18 January. *R-2.6.2 (13 Feb 2008) 13 Feb 2008; Markus Dittrich +R-2.6.2.ebuild: Version bump (fixes bug #209648). 11 Feb 2008; Sébastien Fabbro -R-2.6.0-r1.ebuild, -R-2.6.0-r2.ebuild, R-2.6.1-r1.ebuild: Removed old versions. Added R_HOME environment variable *R-2.6.1-r1 (17 Jan 2008) 17 Jan 2008; Sébastien Fabbro +R-2.6.1-r1.ebuild: Added bash-completion, also install standalone math library, added zip/unzip run dependencies to build R packages, and really fixed docs directory, bug #205103. 16 Jan 2008; Sébastien Fabbro metadata.xml, R-2.6.1.ebuild: Forced blas dependency (bug #176755), fixed documentation directory (bug #205103), more concise descriptions *R-2.6.1 (26 Nov 2007) 26 Nov 2007; Markus Dittrich +R-2.6.1.ebuild: Version bump. *R-2.6.0-r2 (21 Nov 2007) 21 Nov 2007; Sébastien Fabbro -R-2.2.1.ebuild, -R-2.6.0.ebuild, +R-2.6.0-r2.ebuild: Major cleaning of dependencies and ebuild in general, add/remove USE flags making more sense, export pdf and html viewers with xdg-open 21 Nov 2007; Joe Peterson R-2.6.0-r1.ebuild: Add elibtoolize 21 Nov 2007; Joe Peterson R-2.6.0-r1.ebuild: Added ~x86-fbsd keyword (bug #199368) 21 Nov 2007; Raúl Porcel R-2.6.0-r1.ebuild: Add ~alpha/~ia64 wrt #199368 20 Nov 2007; Chris Gianelloni R-2.2.1-r1.ebuild: Stable on amd64 wrt bug #198976. 18 Nov 2007; Jeroen Roovers R-2.6.0-r1.ebuild: Marked ~hppa (bug #199368). 18 Nov 2007; Tobias Scherbaum R-2.2.1-r1.ebuild: ppc stable, bug #198976 18 Nov 2007; Markus Rothe R-2.2.1-r1.ebuild: Stable on ppc64; bug #198976 17 Nov 2007; Raúl Porcel R-2.2.1-r1.ebuild: ia64 stable wrt security #198976 17 Nov 2007; Markus Meier R-2.2.1-r1.ebuild: x86 stable, security bug #198976 15 Nov 2007; Ferris McCormick R-2.2.1-r1.ebuild: Sparc stable, security bug #198976. 15 Nov 2007; Sébastien Fabbro R-2.2.1-r1.ebuild: Oops, reverting to unstable *R-2.6.0-r1 (15 Nov 2007) *R-2.2.1-r1 (15 Nov 2007) 15 Nov 2007; Sébastien Fabbro -files/R.desktop, -files/R-logo.png, metadata.xml, +R-2.2.1-r1.ebuild, -R-2.5.1.ebuild, +R-2.6.0-r1.ebuild: Security fix with pcre (bug #198385), now use system libs. New ebuild on soon to be commited. *R-2.6.0 (06 Oct 2007) 06 Oct 2007; Markus Dittrich -R-2.4.1.ebuild, -R-2.5.0.ebuild, -files/R-2.4.0-as-needed-gentoo.patch, -files/R-2.4.1-as-needed-gentoo.patch, -files/R-2.2.0-ifc-configure.patch, +R-2.6.0.ebuild: Version bump (fixes bug #194767). Also removed obsolete versions and patches. 11 Sep 2007; Markus Dittrich R-2.5.1.ebuild: Fixed messed up paths in libR.pc pkgconfig file (see bug #191986). 22 Jul 2007; Hans de Graaff R-2.2.1.ebuild, R-2.4.1.ebuild, R-2.5.0.ebuild, R-2.5.1.ebuild: Drop virtual/x11 references. *R-2.5.1 (30 Jun 2007) 30 Jun 2007; Markus Dittrich +R-2.5.1.ebuild: Version bump. 11 May 2007; Markus Dittrich R-2.5.0.ebuild: Added gd useflag to allow users to install the GDD module (this fixes bug #177846). Thanks much to Neil for bringing this to our attention. 30 Apr 2007; Markus Dittrich R-2.5.0.ebuild: Fixed improper path in Rscript (closes bug #176546). 27 Apr 2007; Danny van Dyk R-2.5.0.ebuild: Forgot to copy ebuild after final testing. Sandbox violations is fixed now. *R-2.5.0 (27 Apr 2007) 27 Apr 2007; Danny van Dyk +R-2.5.0.ebuild: New version. As-needed patches have been applied upstream. This version can't be build in parallel anymore. 13 Jan 2007; Markus Dittrich -R-2.1.1.ebuild, -R-2.2.0-r1.ebuild, R-2.2.1.ebuild, -R-2.3.0.ebuild, -R-2.3.1.ebuild, -R-2.4.0.ebuild: Removed obsolete ebuilds and finally got rid of the tcltk flag in R-2.2.1 (see bug #17808). *R-2.4.1 (19 Dec 2006) 19 Dec 2006; Markus Dittrich +files/R-2.4.1-as-needed-gentoo.patch, +R-2.4.1.ebuild: New version (fixes bug #158346). 24 Oct 2006; Markus Dittrich +files/R-2.4.0-as-needed-gentoo.patch, R-2.4.0.ebuild: Fixed linking problems with as-needed. See bug #151908. 22 Oct 2006; Markus Dittrich R-2.4.0.ebuild: Append -std=gnu99 to CFLAGS since it is needed to compile several additional R packages via its custom makefile (this fixes bug #152379). Thanks to Aarre Laakso for pointing this out. *R-2.4.0 (05 Oct 2006) 05 Oct 2006; Danny van Dyk +R-2.4.0.ebuild: Added 2.4.0 release. 07 Aug 2006; Ferris McCormick R-2.2.1.ebuild: Stable on sparc --- Bug #135318 --- has been running fine since last January. (But note that on some systems, FEATURES=test fails: Compare Comments 5, 8, 9, 10, and 11.) 28 Jun 2006; Luca Barbato R-2.3.1.ebuild: Made it use -fPIC instead of -fpic 17 Jun 2006; Danny van Dyk R-2.2.1.ebuild: Marked stable on ia64. 10 Jun 2006; Michael Hanselmann R-2.2.1.ebuild: Stable on ppc. 07 Jun 2006; Chris Gianelloni R-2.2.1.ebuild: Stable on x86 wrt bug #135318. 06 Jun 2006; Markus Rothe R-2.2.1.ebuild: Stable on ppc64; bug #135318 02 Jun 2006; Danny van Dyk R-2.1.1.ebuild, R-2.2.0-r1.ebuild, R-2.2.1.ebuild, R-2.3.0.ebuild, R-2.3.1.ebuild: Added inheritance of flag-o-matic for filter-ldflags calls. *R-2.3.1 (02 Jun 2006) 02 Jun 2006; Danny van Dyk R-2.2.1.ebuild, +R-2.3.1.ebuild: Added R-2.3.1. Marked R-2.2.1 stable on amd64. *R-2.3.0 (10 May 2006) 10 May 2006; Danny van Dyk R-2.1.1.ebuild, R-2.2.0-r1.ebuild, R-2.2.1.ebuild, +R-2.3.0.ebuild: Added version 2.3.0: Fixes bug #127818. Added filter for -Bdirect LDFLAG: Fixes bug #122465. 01 Apr 2006; Aron Griffis R-2.2.1.ebuild: Mark 2.2.1 ~ia64 16 Jan 2006; Marcus D. Hanwell R-2.2.1.ebuild: Ported deps for modular X. 16 Jan 2006; Marcus D. Hanwell R-2.2.1.ebuild: Add gfortran to the list of allowed Fortran compilers, closes bug 118147. *R-2.2.1 (03 Jan 2006) 03 Jan 2006; Marcus D. Hanwell +R-2.2.1.ebuild: Version bump, closes bug 115304. *R-2.2.0-r1 (12 Dec 2005) 12 Dec 2005; Marcus D. Hanwell -R-2.1.0-r1.ebuild, -R-2.2.0.ebuild, +R-2.2.0-r1.ebuild: Added some extra seds to get rid of temp paths, closes bug 115140. Pruned old versions. 23 Nov 2005; Marcus D. Hanwell files/digest-R-2.2.0, Manifest: Fixed bad digest, closes bug 113319. *R-2.2.0 (22 Nov 2005) 22 Nov 2005; Danny van Dyk +files/R-2.2.0-ifc-configure.patch, R-2.1.0-r1.ebuild, R-2.1.1.ebuild, +R-2.2.0.ebuild: Added version 2.2.0 with support for compilation with Intel(R) Fortran Compiler. Removed obsolete version 2.0.1. Fixed stale file Bug by running 64bit test in ${T} now. 03 Sep 2005; Markus Rothe R-2.1.1.ebuild: Stable on ppc64 02 Sep 2005; Michael Hanselmann R-2.1.1.ebuild: Stable on ppc. 22 Aug 2005; Gustavo Zacarias R-2.1.1.ebuild: Stable on sparc 22 Aug 2005; Marcus D. Hanwell -R-2.0.1.ebuild, R-2.1.1.ebuild: Removed old version. Stable on amd64 and x86. 13 Aug 2005; Danny van Dyk R-2.0.1.ebuild, R-2.1.0-r1.ebuild, R-2.1.1.ebuild: Changed SRC_URI to new 'cran' thirdparty mirror. *R-2.1.1 (01 Jul 2005) 01 Jul 2005; Danny van Dyk R-2.0.1.ebuild, R-2.1.0-r1.ebuild, +R-2.1.1.ebuild: Moved 64bit check to pkg_setup() to make fortran.eclass work again. Bumped to version 2.1.1 18 Jun 2005; Markus Rothe R-2.1.0-r1.ebuild: Stable on ppc64 17 Jun 2005; Michael Hanselmann R-2.1.0-r1.ebuild: Stable on ppc. 13 Jun 2005; Gustavo Zacarias R-2.1.0-r1.ebuild: Stable on sparc 12 Jun 2005; Marcus D. Hanwell -R-1.9.0-r1.ebuild: Removing old version. Closes bug 91512. 11 Jun 2005; Marcus D. Hanwell R-2.1.0-r1.ebuild: Stable on amd64 and x86. 07 Jun 2005; Patrick Kursawe R-2.0.1.ebuild, R-2.1.0-r1.ebuild: Added LDPATH to R libs, bug #90601 01 Jun 2005; Mike Frysinger R-1.9.0-r1.ebuild, R-2.0.1.ebuild: Change USE=bzlib to USE=bzip2. *R-1.9.0-r1 (25 May 2005) 25 May 2005; Marcus D. Hanwell +R-1.9.0-r1.ebuild: Bring back R-1.9.0-r1 until <=dev-python/rpy-0.3.5-r1 are removed from portage. 25 May 2005; Marcus D. Hanwell -R-1.9.0-r1.ebuild: Removed old version. 25 May 2005; Luca Barbato R-2.0.1.ebuild: Marked ppc 24 May 2005; Marcus D. Hanwell R-2.0.1.ebuild: Updated 64 bit detection code. 10 May 2005; Gustavo Zacarias R-2.0.1.ebuild: Stable on sparc 08 May 2005; Marcus D. Hanwell -R-1.9.1.ebuild, -R-2.0.0.ebuild, R-2.0.1.ebuild, -R-2.1.0.ebuild, R-2.1.0-r1.ebuild: Marked 2.0.1 stable on amd64 and x86, cleaned out old ebuilds. Added new 64 bit detection code to 2.1.0-r1 as per bug 91512. *R-2.1.0-r1 (29 Apr 2005) 29 Apr 2005; Marcus D. Hanwell +R-2.1.0-r1.ebuild: Get rid of obsolete USE flags, tidy up deps a little. Thanks to MATSUU Takuto in bug 67834 for the patch. 21 Apr 2005; Marcus D. Hanwell R-2.1.0.ebuild: Update deps to reflect new USE flags. *R-2.1.0 (20 Apr 2005) 20 Apr 2005; Marcus D. Hanwell +R-2.1.0.ebuild: Version bump, ebuild cleanups and some additional USE flags. Thanks to matsuu for some of the suggestions in bug 67834. *R-2.0.1 (21 Feb 2005) 21 Feb 2005; Danny van Dyk R-2.0.0.ebuild, +R-2.0.1.ebuild: Fixed a sandbox violation in R-2.0.0 (BUG #79004) and marked stabled on amd64. Added R-2.0.1 (BUG #72313). 17 Feb 2005; Bryan Østergaard R-1.9.1.ebuild: ~alpha keyword. 02 Feb 2005; Danny van Dyk R-2.0.0.ebuild: GNU Fortran 77 profile name changed to g77 in fortran.eclass 17 Nov 2004; Markus Rothe R-2.0.0.ebuild: stable on ppc64 10 Oct 2004; Danny van Dyk -R-1.8.1.ebuild, R-1.9.0-r1.ebuild, R-2.0.0.ebuild: R-2.0.0 now in testing on x86,sparc,amd64,ppc and ppc64; using new fortran.eclass. R-1.9.0-r1 stable on all arches. Removed obsolete R-1.8.1. *R-2.0.0 (07 Oct 2004) 07 Oct 2004; George Shapovalov R-2.0.0 : new version, masked with KEYWORDS="-*" to get a bit more testing 30 Sep 2004; Ferris McCormick R-1.9.0-r1.ebuild: Stable for sparc. 12 Sep 2004; Danny van Dyk R-1.9.0-r1.ebuild, R-1.9.1.ebuild: Removed f2c support for dev-lang/R on 64-bit arches. This is entirely R's fault. f2c works perfectly right. Future versions of dev-lang/R will check for this in ./configure. For R-1.9.{0,1} the ebuild checks for it. Fixes BUG #61042. *R-1.9.1 (22 Aug 2004) 09 Sep 2004; Philippe Trottier R-1.9.1.ebuild, marked ~ppc64 22 Aug 2004; Danny van Dyk -R-1.9.0.ebuild, +R-1.9.1.ebuild: Version bump to 1.9.1 (current stable). Removed obsolete 1.9.0. 06 Aug 2004; Danny van Dyk R-1.9.0-r1.ebuild: Marked stable on amd64. 11 Jul 2004; Danny van Dyk R-1.8.1.ebuild, R-1.9.0-r1.ebuild, R-1.9.0.ebuild: Fixed BUG #56616. Tidied up g77/f2c check in >=R-1.9.0. Added f2c USE flag. 01 Jul 2004; Jeremy Huddleston R-1.8.1.ebuild, R-1.9.0-r1.ebuild, R-1.9.0.ebuild: virtual/glibc -> virtual/libc 01 Jul 2004; Danny van Dyk R-1.8.1.ebuild, R-1.9.0-r1.ebuild, R-1.9.0.ebuild: Fixed BUG #55386 for amd64. Pending for rest of arches. *R-1.9.0-r1 (05 Jun 2004) 05 Jun 2004; Patrick Kursawe R-1.9.0-r1.ebuild: Added a few USE flags according to suggestions by Leo Chen 28 May 2004; Patrick Kursawe R-1.9.0.ebuild: Removing the f77 USE flag check - just giving a hint when no g77 found. 17 May 2004; Patrick Kursawe R-1.9.0.ebuild: adding f77 to IUSE 11 May 2004; Patrick Kursawe R-1.9.0.ebuild: pkg_setup checks for g77 presence now. 20 Apr 2004; Patrick Kursawe R-1.9.0.ebuild: Changed dependency - works also with current libglade, see bug #47825 *R-1.9.0 (13 Apr 2004) 13 Apr 2004; Patrick Kursawe R-1.8.1.ebuild, R-1.9.0.ebuild: Version bump, added write permission for /var/cache/fonts 01 Apr 2004; Patrick Kursawe R-1.8.0.ebuild, R-1.8.1.ebuild: 1.8.1 is stable 22 Mar 2004; Patrick Kursawe R-1.8.1.ebuild: Fixing bug #40100 (problems with newer Xfree) 25 Feb 2004; Patrick Kursawe R-1.4.1-r1.ebuild, R-1.4.1.ebuild, R-1.5.1.ebuild, R-1.6.1.ebuild, R-1.6.2.ebuild, R-1.7.0.ebuild, R-1.7.1.ebuild, R-1.8.0.ebuild, files/R-1.5.1-tcltk.diff: Big cleanup, marking 1.8.0 as stable *R-1.8.1 (17 Feb 2004) 17 Feb 2004; Patrick Kursawe R-1.8.1.ebuild: Version bump 21 Oct 2003; David Holm R-1.8.0.ebuild: Added to ~ppc. *R-1.8.0 (16 Oct 2003) 16 Oct 2003; George Shapovalov R-1.8.0 : new version (#30784), fixes gnome? dependencies thanks to kdh for an update *R-1.7.1 (19 Jun 2003) 19 Jun 2003; George Shapovalov R-1.7.1 : new version (#23012), now correctly builds tcltk support fix and update by Tristan Henderson *R-1.7.0 (29 May 2003) 29 May 2003; Grant Goodyear R-1.7.0.ebuild: Version update. Thanks to Stuart Luppescu for the heads-up. *R-1.6.2 (12 Apr 2003) 12 Apr 2003; Grant Goodyear Manifest, R-1.6.2.ebuild: Version bump *R-1.6.1 (12 Dec 2002) 12 Dec 2002; George Shapovalov R-1.6.1.ebuild : version update, patching is unnecessary now. Update subitted by Sam Wouters , see #11313 * Autoupdate keywords (12-6-02) 06 Dec 2002; Rodney Rees : changed sparc ~sparc keywords *R-1.5.1 (11 July 2002) 09 Aug 2002; George Shapovalov R-1.5.1.ebuild : fixed the wrappers: R installs two identical wrappers (R that invoke R.bin) under /usr/bin and /usr/lib/R/bin/. Only one of these was modified to have correct R_HOME_DIR Changed ebuild to modify R under /usr/lib/R/bin and symlink it into /usr/bin 11 July 2002; George Shapovalov R-1.5.1.ebuild, files/digest-R-1.5.1 : upped version new version submitted by Tristan Henderson *R-1.4.1-r1 (11 Apr 2002) 11 Apr 2002; Spider Forcing an upgrade due to libpng upgrade. *R-1.4.1 (19 Feb 2002) 19 Feb 2002; T.Neidt ChangeLog, R-1.4.1.ebuild : Initial commit. R is GNU S - A language and environment for statistical computing and graphics. Gnome and tcltk gui's are available if in USE. If gnome, a rudimentary menu entry is made under Applications. However, it has the annoying tendency to pop up a terminal window to start the gui. (todo 1) Also, the html files are not accessible from the toolbar menu entry unless you happen to be running netscape. (todo 2) This ebuild makes use of a new USE variable, 'atlas', which will compile R using the auto-tuned blas libraries provided by atlas. NOTE: atlas ebuild currently only provides static libraries. Shared libraries are in the works.