# ChangeLog for sci-biology/bioperl # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.47 2010/10/17 22:06:04 weaver Exp $ *bioperl-9999-r1 (17 Oct 2010) 17 Oct 2010; Andrey Kislyuk <weaver@gentoo.org> -bioperl-9999.ebuild, +bioperl-9999-r1.ebuild: Update live ebuild for upstream svm->github migration, bug 338362. Thanks to Joel Berendzen 02 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild: Fix typo 01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild: Fix typo *bioperl-1.6.1 (01 Oct 2009) 01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.1.ebuild: Version bump 11 Jun 2009; Markus Meier <maekke@gentoo.org> bioperl-1.6.0-r2.ebuild: amd64 stable, bug #270585 02 Jun 2009; Christian Faulhammer <fauli@gentoo.org> bioperl-1.6.0-r2.ebuild: stable x86, bug 270585 24 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild, bioperl-9999.ebuild: Moved Bio-ASN1-EntrezGene to PDEPEND per bug 269583 13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-9999.ebuild: Override depend on perl 5.10 13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild, bioperl-9999.ebuild: Remove module-build from RDEPEND (bug 246942) *bioperl-1.6.0-r2 (08 Apr 2009) 08 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0-r1.ebuild, +bioperl-1.6.0-r2.ebuild, bioperl-9999.ebuild: Revision bump - add missing dependencies 24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml: Giving up maintainership of this package. *bioperl-9999 (16 Mar 2009) *bioperl-1.6.0-r1 (16 Mar 2009) 16 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0.ebuild, +bioperl-1.6.0-r1.ebuild, +bioperl-9999.ebuild: Rewrite, commit split 1.6.0 packages and live ebuilds for packages in 1.6.0 release. Bug 179110. *bioperl-1.6.0 (12 Mar 2009) 12 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.0.ebuild: Testing release for revision bump 15 Jul 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild: x86 stable wrt #222727 06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> bioperl-1.5.1-r1.ebuild: Stable on amd64. 06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> bioperl-1.5.1-r1.ebuild: Fixed test suite. 06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> bioperl-1.5.1-r1.ebuild: Fixed dependency on io_lib. 02 Jan 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild: Re-add ~alpha/~ia64 10 Dec 2006; Olivier Fisette <ribosome@gentoo.org> bioperl-1.5.1-r1.ebuild: Fixed Perl dependencies (see bug #157672). 22 Oct 2006; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild, -bioperl-1.5.1.ebuild, bioperl-1.5.1-r1.ebuild: Fixed description. Removed old ebuild. 30 Sep 2006; Jason Wever <weeve@gentoo.org> bioperl-1.5.1.ebuild, bioperl-1.5.1-r1.ebuild: Added ~sparc keyword wrt bug #149577. 30 Sep 2006; Olivier Fisette <ribosome@gentoo.org> bioperl-1.5.1-r1.ebuild: Fixing dependency on io_lib (thanks to Weeve for pointing this out). *bioperl-1.5.1-r1 (30 Sep 2006) 30 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +bioperl-1.5.1-r1.ebuild: Added dependency on io_lib for the Staden extensions. Dropping ~alpha, ~ia64 and ~sparc keywords (see bug #149577). *bioperl-1.5.1 (13 Sep 2006) 13 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +bioperl-1.5.1.ebuild: New upstream version. Thanks to Greg Wilson <gdw1@cornell.edu>, Martin Mokrejs <mmokrejs@ribosome.natur.cuni.cz> and Neil Shephard <nshephard@gmail.com> for their work (see bug #79459). 18 Aug 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild: Marking amd64 stable 30 Mar 2006; Aron Griffis <agriffis@gentoo.org> bioperl-1.4.ebuild: Mark 1.4 ~ia64 13 Feb 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild: Virtuals for perl-core 28 Nov 2005; <mcumming@gentoo.org> bioperl-1.0.2.ebuild, bioperl-1.2.2.ebuild, bioperl-1.2.3.ebuild, bioperl-1.2.ebuild, bioperl-1.4.ebuild: Switched from perl-module to perl-app eclass 19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml: Maintainer changed from Stephen Diener (MIA) to Olivier Fisette. 05 Aug 2005; Herbie Hopkins <herbs@gentoo.org> bioperl-1.4.ebuild: Marked ~amd64 wrt bug #101339. 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild: dev-perl/Storable => perl-core/Storable migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild: dev-perl/Storable => perl-core/Storable migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild: dev-perl/Storable => perl-core/Storable migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild: dev-perl/Storable => perl-core/Storable migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild: dev-perl/Storable => perl-core/Storable migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild: dev-perl/File-Temp => perl-core/File-Temp migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild: dev-perl/File-Temp => perl-core/File-Temp migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild: dev-perl/File-Temp => perl-core/File-Temp migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild: dev-perl/File-Temp => perl-core/File-Temp migration 25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild: dev-perl/File-Temp => perl-core/File-Temp migration 30 Mar 2005; Gustavo Zacarias <gustavoz@gentoo.org> bioperl-1.4.ebuild: Keyworded ~sparc 09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild: Added regression test support. Fixes bug #38169. 29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> : Change encoding to UTF-8 for GLEP 31 compliance *bioperl-1.2 (23 Dec 2004) 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, +files/biodbgff-enable-1.2.2.patch, +files/biodbgff-enable-1.2.3.patch, +files/bioperl-1.2-manpage.diff, +files/domanpages-1.2.2.patch, +bioperl-1.0.2.ebuild, +bioperl-1.2.2.ebuild, +bioperl-1.2.3.ebuild, +bioperl-1.2.ebuild, +bioperl-1.4.ebuild: Moved from app-sci/bioperl to sci-biology/bioperl. 30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild, bioperl-1.0.2.ebuild: Q.A.: Fixed RDEPEND=$DEPEND, fixed LICENSE. 03 Aug 2004; David Holm <dholm@gentoo.org> bioperl-1.4.ebuild: Added to ~ppc. 03 Jul 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild: Stable on alpha. 02 Jun 2004; Aron Griffis <agriffis@gentoo.org> bioperl-1.2.2.ebuild, bioperl-1.2.3.ebuild: Fix use invocation 05 May 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild: bumped 1.4 to stable 05 May 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.2.ebuild: Stable on alpha. 20 Apr 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild: Added ~alpha to keywords. 14 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild: removed src_test; fixes bug #38169, or at least works around it *bioperl-1.4 (08 Jan 2004) 08 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild: version bump 24 Nov 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.3.ebuild: bump to stable. *bioperl-1.2.3 (24 Oct 2003) 24 Oct 2003; <sediener@gentoo.org> bioperl-1.2.3.ebuild: new release added. *bioperl-1.2.2 (28 Aug 2003) 28 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild: Bumped to stable x86 *bioperl-1.2.2 (02 Aug 2003) 02 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild, files/biodbgff-enable-1.2.2.patch, files/domanpages-1.2.2.patch: New Version thanks to Gontran Zepeda <gontran@gontran.net> in bug# 24467 : Also fixes bug# 25079 *bioperl-1.2 (24 Apr 2003) 24 Apr 2003; Jon Portnoy <avenj@gentoo.org> bioperl-1.2.ebuild : Version bump, ebuild submitted by Gontran Zepeda <gontran@gontran.net> in bug #13826 *bioperl-1.0.2 (21 Dec 2002) 21 Dec 2002; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild: Initial import. Ebuild submitted by Gontran Zepeda <gontran@gontran.net> Bug 11498