# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild,v 1.1 2011/12/27 09:39:04 jlec Exp $ EAPI=4 inherit toolchain-funcs flag-o-matic webapp DESCRIPTION="The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath" HOMEPAGE="http://genome.ucsc.edu/" SRC_URI="http://hgdownload.cse.ucsc.edu/admin/jksrc.v${PV}.zip" LICENSE="blat" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="+mysql +server static-libs" REQUIRED_USE="server? ( mysql )" WEBAPP_MANUAL_SLOT="yes" DEPEND=" app-arch/unzip !<sci-biology/ucsc-genome-browser-223 mysql? ( virtual/mysql ) server? ( virtual/httpd-cgi )" # TODO: test with other webservers RDEPEND="${DEPEND}" S="${WORKDIR}/kent" src_prepare() { use server && webapp_src_preinst sed \ -e 's/-Werror//' \ -e "/COPT/s:=.*$:=${LDFLAGS}:g" \ -e "s/CC=gcc/CC=$(tc-getCC) ${CFLAGS}/" \ -e 's:${CC} ${COPT} ${CFLAGS}:${CC} ${CFLAGS}:g' \ -i src/inc/common.mk src/hg/lib/makefile || die find -name makefile -or -name cgi_build_rules.mk \ | xargs sed -i \ -e 's/-${USER}//g' \ -e 's/-$(USER)//g' \ -e 's:-O2::g' \ -e 's:-ggdb::g' \ -e 's:-pipe::g' || die sed \ -e 's:${DISTDIR}${BINDIR}:${BINDIR}:g' \ -i src/hg/genePredToMafFrames/makefile || die } src_compile() { export MACHTYPE=${MACHTYPE/-*/} \ BINDIR="${WORKDIR}/destdir/opt/${PN}/bin" \ SCRIPTS="${WORKDIR}/destdir/opt/${PN}/cluster/scripts" \ ENCODE_PIPELINE_BIN="${WORKDIR}/destdir/opt/${PN}/cluster/data/encode/pipeline/bin" \ PATH="${BINDIR}:${PATH}" \ STRIP="echo 'skipping strip' " export MYSQLLIBS="none" MYSQLINC="none" DOCUMENTROOT="none" CGI_BIN="none" use mysql && export MYSQLLIBS="-L${EROOT}usr/$(get_libdir)/mysql/ -lmysqlclient -lz -lssl" \ MYSQLINC="${ROOT}usr/include/mysql" use server && export DOCUMENTROOT="${WORKDIR}/destdir/${MY_HTDOCSDIR}" \ CGI_BIN="${WORKDIR}/destdir/${MY_HTDOCSDIR}/cgi-bin" mkdir -p "$BINDIR" "$SCRIPTS" "$ENCODE_PIPELINE_BIN" || die use server && mkdir -p "$CGI_BIN" "$DOCUMENTROOT" emake -C src clean emake -C src/lib emake -C src/jkOwnLib emake -C src/utils/stringify emake -C src blatSuite if use mysql; then emake -j1 -C src/hg utils emake -j1 -C src utils emake -C src libs userApps if use server; then emake -j1 -C src/hg emake -j1 -C src fi fi } src_install() { use server && webapp_src_preinst cp -ad "${WORKDIR}"/destdir/* "${D}" || die use static-libs && dolib.a src/lib/${MACHTYPE/-*/}/*.a echo "PATH=${EPREFIX}/opt/${PN}/bin" > "${S}/98${PN}" doenvd "${S}/98${PN}" use server && webapp_postinst_txt en src/product/README.QuickStart use server && webapp_src_install insinto "/usr/include/${PN}" doins src/inc/*.h insinto "/usr/share/${PN}" doins -r src/product keepdir "/usr/share/doc/${PF}" find -name 'README*' -or -name '*.doc' | grep -v test | cpio -padv "${ED}/usr/share/doc/${PF}" || die } pkg_postinst() { use server && webapp_pkg_postinst }