diff options
| author |   Repository mirror & CI <repomirrorci@gentoo.org> | 2024-12-17 22:21:58 +0000 |
|---|---|---|
| committer | Repository mirror & CI <repomirrorci@gentoo.org> | 2024-12-17 22:21:58 +0000 |
| commit | 18833cd4b12854650f145a65811bc3c07c8fd150 (patch) | |
| tree | 5808a1c9c8890d91bf83ac3bc314ef960a6dad57 /metadata/md5-cache/sci-biology | |
| parent | Merge updates from master (diff) | |
| download | gentoo-18833cd4b12854650f145a65811bc3c07c8fd150.tar.gz gentoo-18833cd4b12854650f145a65811bc3c07c8fd150.tar.bz2 gentoo-18833cd4b12854650f145a65811bc3c07c8fd150.zip | |
2024-12-17 22:21:57 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
116 files changed, 116 insertions, 116 deletions
diff --git a/metadata/md5-cache/sci-biology/STAR-2.7.10a b/metadata/md5-cache/sci-biology/STAR-2.7.10a index 38332e47df85..3a5ddedecea9 100644 --- a/metadata/md5-cache/sci-biology/STAR-2.7.10a +++ b/metadata/md5-cache/sci-biology/STAR-2.7.10a @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=sci-libs/htslib:= SLOT=0 SRC_URI=https://github.com/alexdobin/STAR/archive/2.7.10a.tar.gz -> STAR-2.7.10a.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=521aed057c81cfa841ab4b2dcf63e65b diff --git a/metadata/md5-cache/sci-biology/abyss-2.3.4 b/metadata/md5-cache/sci-biology/abyss-2.3.4 index 9775b5490aca..a99351bf237a 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.3.4 +++ b/metadata/md5-cache/sci-biology/abyss-2.3.4 @@ -11,5 +11,5 @@ LICENSE=GPL-3 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3 SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.3.4.tar.gz -> abyss-2.3.4.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=498079fc466ad15118faea6d1635cce8 diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r6 b/metadata/md5-cache/sci-biology/amap-2.2-r6 index 74d686901a4b..cac4dbcdafeb 100644 --- a/metadata/md5-cache/sci-biology/amap-2.2-r6 +++ b/metadata/md5-cache/sci-biology/amap-2.2-r6 @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=java? ( >=virtual/jre-1.8:* ) java? ( >=dev-java/java-config-2.2.0-r3 source? ( app-arch/zip ) ) SLOT=0 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz -_eclasses_=java-utils-2 c610b1541a10e37cb26ab5b707a744f1 java-pkg-opt-2 28044ae40e7846886b6f5eca24661629 java-pkg-simple 8221818a4df90800de803a44fd0875b4 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=java-utils-2 c610b1541a10e37cb26ab5b707a744f1 java-pkg-opt-2 28044ae40e7846886b6f5eca24661629 java-pkg-simple 8221818a4df90800de803a44fd0875b4 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=551638378b4f2daa2418bdd16c1420a9 diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5 index 1b3f7e9dbe4c..333620dc2c02 100644 --- a/metadata/md5-cache/sci-biology/augustus-2.5.5 +++ b/metadata/md5-cache/sci-biology/augustus-2.5.5 @@ -8,5 +8,5 @@ KEYWORDS=amd64 ~x86 LICENSE=Artistic SLOT=0 SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=4c500e601e76f119e63d2dc13321648c diff --git a/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 b/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 index a6c9e177c5b9..b204913240ff 100644 --- a/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 +++ b/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 @@ -11,5 +11,5 @@ LICENSE=Artistic RDEPEND=dev-db/sqlite:3 dev-db/mysql++:= dev-db/mysql-connector-c:= dev-libs/boost:=[zlib] sci-biology/bamtools:= sci-biology/samtools:0 sci-libs/gsl:= sci-libs/htslib:= sci-libs/suitesparse sci-mathematics/lpsolve:= sys-libs/zlib SLOT=0 SRC_URI=https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v3.4.0.tar.gz -> augustus-3.4.0.tar.gz -_eclasses_=docs 006125f2158d2f16904ebd9114336058 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=docs 006125f2158d2f16904ebd9114336058 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=5af682d1467b7eddf54bfe603492b4fa diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2 index 7af0112dc09a..d92751530f91 100644 --- a/metadata/md5-cache/sci-biology/bamtools-2.5.2 +++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2 @@ -10,5 +10,5 @@ LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/2.5.2 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 _md5_=efdfbdbf4181a018ee9965d5c16be71f diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999 index e7bc53173719..9d797023d9df 100644 --- a/metadata/md5-cache/sci-biology/bamtools-9999 +++ b/metadata/md5-cache/sci-biology/bamtools-9999 @@ -9,5 +9,5 @@ LICENSE=MIT PROPERTIES=live RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/9999 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 git-r3 875eb471682d3e1f18da124be97dcc81 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 git-r3 875eb471682d3e1f18da124be97dcc81 _md5_=a2299dc6ca850c1c25582656d7586681 diff --git a/metadata/md5-cache/sci-biology/bcftools-1.19 b/metadata/md5-cache/sci-biology/bcftools-1.19 index 72b569f0ec73..59fbee86739c 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.19 +++ b/metadata/md5-cache/sci-biology/bcftools-1.19 @@ -12,5 +12,5 @@ RDEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[p REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.19/bcftools-1.19.tar.bz2 -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 _md5_=88036066dfeb432f0a530195f08f59f7 diff --git a/metadata/md5-cache/sci-biology/bcftools-1.20 b/metadata/md5-cache/sci-biology/bcftools-1.20 index 1987d9087c73..c2b6dc7a0c4a 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.20 +++ b/metadata/md5-cache/sci-biology/bcftools-1.20 @@ -12,5 +12,5 @@ RDEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[p REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.20/bcftools-1.20.tar.bz2 -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 _md5_=88036066dfeb432f0a530195f08f59f7 diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0 index 06c64de5f3a5..c00360ef89be 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.30.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0 @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-any-r1 6ddb5e75c10db046f89ebe39c85e1d82 +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-any-r1 6ddb5e75c10db046f89ebe39c85e1d82 _md5_=6362b2cc40163766b0448cea57894c3a diff --git a/metadata/md5-cache/sci-biology/bedtools-2.31.1 b/metadata/md5-cache/sci-biology/bedtools-2.31.1 index ad31b025339a..61b99be76831 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.31.1 +++ b/metadata/md5-cache/sci-biology/bedtools-2.31.1 @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.31.1/bedtools-2.31.1.tar.gz -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-any-r1 6ddb5e75c10db046f89ebe39c85e1d82 +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-any-r1 6ddb5e75c10db046f89ebe39c85e1d82 _md5_=921c507db490b24a89b6abbc428d9a4f diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index 8e375eca6109..95dccbaaa875 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -11,5 +11,5 @@ RDEPEND=dev-perl/XML-Simple RESTRICT=test SLOT=0 SRC_URI=https://downloads.sourceforge.net/bfast/bfast-0.7.0a.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=de9f50a6363291c4ea76ed050d9b2dfb diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r3 b/metadata/md5-cache/sci-biology/biogrep-1.0-r3 index 09e9086a85a7..5bd67b8a5e81 100644 --- a/metadata/md5-cache/sci-biology/biogrep-1.0-r3 +++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r3 @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf ) -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=18fc653ace8feaf53e4d1c1818b7b00c diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1 index 8eb0c06f0c76..2afbb0e26d61 100644 --- a/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1 @@ -14,5 +14,5 @@ REQUIRED_USE=minimal? ( !graphviz ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d _md5_=275c67756e8440c392c02c29c75e1388 diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2 index 648352a15079..53eeef0b8e67 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2 +++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2 @@ -12,5 +12,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/ RESTRICT=test !test? ( test ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d _md5_=56259564f94ae015e0cdd27bc2db8b21 diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1 index 04e3432116a0..e46ec88ed73f 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1 @@ -12,5 +12,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 >=dev-lang/perl-5.38.2 RESTRICT=test !test? ( test ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d _md5_=6c074e2b53c3e7242c6ed1e352537670 diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1 index 6e0e51b27014..427124d94e2a 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1 @@ -12,5 +12,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl RESTRICT=test !test? ( test ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f perl-functions 1863acf0982afafc67797e3ce7275b4c readme.gentoo-r1 b045f3acf546393ab6b3170781875358 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 perl-module 25ca2ff8e7971cb7f817f0bda4be696d _md5_=517668f69988f82c6a81d26d36633342 diff --git a/metadata/md5-cache/sci-biology/biopython-1.81-r1 b/metadata/md5-cache/sci-biology/biopython-1.81-r1 index 1f1f3234f4d5..3236879852f8 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.81-r1 +++ b/metadata/md5-cache/sci-biology/biopython-1.81-r1 @@ -12,5 +12,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_pytho REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 ) SLOT=0 SRC_URI=https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.81.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-r1 2def7a4ce233dfa344f613025c619a23 distutils-r1 85ccd3b54a6533fb120ee52b7c76a3df optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 pypi ad1b21f87d117ae9bb089bdb65b8f013 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-r1 2def7a4ce233dfa344f613025c619a23 distutils-r1 85ccd3b54a6533fb120ee52b7c76a3df optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 pypi ad1b21f87d117ae9bb089bdb65b8f013 _md5_=82f098dc006d74b880969c95dbd7e786 diff --git a/metadata/md5-cache/sci-biology/blat-34-r3 b/metadata/md5-cache/sci-biology/blat-34-r3 index a3a79c8bd588..05712b3b0284 100644 --- a/metadata/md5-cache/sci-biology/blat-34-r3 +++ b/metadata/md5-cache/sci-biology/blat-34-r3 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=blat SLOT=0 SRC_URI=http://www.soe.ucsc.edu/~kent/src/blatSrc34.zip -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=5de19b6facdbdd7214fad082a7d27f77 diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4 index 4f067d2566a2..3f55080df796 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.4.4 +++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4 @@ -12,5 +12,5 @@ RDEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) dev-lang/perl REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 ) SLOT=2 SRC_URI=https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 _md5_=96d47aea8f0f6093567ab8b36422563c diff --git a/metadata/md5-cache/sci-biology/bowtie-2.5.1 b/metadata/md5-cache/sci-biology/bowtie-2.5.1 index 5a963d8096e9..d9825248e1bb 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.5.1 +++ b/metadata/md5-cache/sci-biology/bowtie-2.5.1 @@ -13,5 +13,5 @@ REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 python_sing RESTRICT=test SLOT=2 SRC_URI=https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.5.1/bowtie2-2.5.1-source.zip -_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 +_eclasses_=multiprocessing 1e32df7deee68372153dca65f4a7c21f toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 _md5_=a50e921e5ef5d18a231c63a57c185597 diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.17 b/metadata/md5-cache/sci-biology/bwa-0.7.17 index 6ba2556fa907..35c4ab61c7e9 100644 --- a/metadata/md5-cache/sci-biology/bwa-0.7.17 +++ b/metadata/md5-cache/sci-biology/bwa-0.7.17 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib dev-lang/perl SLOT=0 SRC_URI=https://github.com/lh3/bwa/archive/v0.7.17.tar.gz -> bwa-0.7.17.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=ba2dadcc176ba326d1290485ff909d7f diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6-r1 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6-r1 index 54e7eb932531..05b80b41ab29 100644 --- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6-r1 +++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=72c254d2d4b43c49ff9b0ddcde699acb diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 index 6a069663f672..a3f6aa2f53ee 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=e2928c88a8676586ff3c5e4a7f534608 diff --git a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 b/metadata/md5-cache/sci-biology/clustalw-1.83-r4 index 1dd7d6f0f84d..07f7a7d6ebb8 100644 --- a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 +++ b/metadata/md5-cache/sci-biology/clustalw-1.83-r4 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~ppc ppc64 sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=clustalw SLOT=1 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/clustalw1.83.UNIX.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=48325a27354b2683cb1b693a641b7ab7 diff --git a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r3 b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r3 index e969c1781f88..e5d67d433f89 100644 --- a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r3 +++ b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r3 @@ -10,5 +10,5 @@ LICENSE=public-domain RDEPEND=virtual/mpi SLOT=0 SRC_URI=http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/clustalw-mpi-0.13.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=689841db0e3b7d6629b51049a2942165 diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 b/metadata/md5-cache/sci-biology/clustalx-2.1-r3 index 16af49851609..be74c9c4c1b8 100644 --- a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 +++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r3 @@ -9,5 +9,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 >=sci-biology/clustalw-2.1 SLOT=0 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz -_eclasses_=desktop 3a72ffe0d8e1dd73af3a1c8c15a59fed toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 qmake-utils a8dd17b1d94586164f5e3fc12b1c6b81 +_eclasses_=desktop 3a72ffe0d8e1dd73af3a1c8c15a59fed toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 qmake-utils a8dd17b1d94586164f5e3fc12b1c6b81 _md5_=e6411254fb201ed236c05ca88cfdad74 diff --git a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 index f4f9d0a8ff71..c5e8da2a0547 100644 --- a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 +++ b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=LGPL-2.1 SLOT=0 SRC_URI=http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=b2a78c4cfa60eb348ae63d076ecb5fba diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1-r1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1-r1 index f923cda1e87a..a79d27110709 100644 --- a/metadata/md5-cache/sci-biology/dialign2-2.2.1-r1 +++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1-r1 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=LGPL-2.1 SLOT=0 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=879353dc71e4dca1cd8026068a0c808c diff --git a/metadata/md5-cache/sci-biology/elph-1.0.1-r3 b/metadata/md5-cache/sci-biology/elph-1.0.1-r3 index be98386ba799..d1963b1ae0ef 100644 --- a/metadata/md5-cache/sci-biology/elph-1.0.1-r3 +++ b/metadata/md5-cache/sci-biology/elph-1.0.1-r3 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=Artistic SLOT=0 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/elph/ELPH-1.0.1.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=33ffc2d8f7374d9619cfcb1838da0680 diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 index ad048b850ce2..8a0ed88fa558 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=56469e1c3bb7c4baac8ad99638b59ff0 diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 index ebe73fb89df9..38a9a8c79a85 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=864a13621791118f794da4601dcde749 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 index cd10ab63a307..c25f570d4d3b 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=af29c98cab7134ba05c6d874e37d95dc diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 index 66f417be11e8..9b3033b5d7fd 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=677a5e171c80e94969c1ab9c0b55e283 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 index 64d575fc6ace..c5c0b8889fe6 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=e0ca10c2776835b0cd20c1b0f0721a1a diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 index 4a4db66209f5..3f91203443ea 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=a33d45b5be798e7ebfcef8c59a300c88 diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 index e2a6a10d1c20..b8357a40d912 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=1dc2d8d9744e46254a4e0cd2547cd4ec diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 index 39e85f7ef53d..94f69f6fbc58 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=fb64fb071ec661ab550e0b33bc78b536 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 index a1b00814c628..01e4506bee8c 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=06b3cb4ecb53ada6b96c0f8fe91680e9 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 index 5a1ba1d73fe4..97de41b7b069 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=86e12f8b76c4395cf8cf96c8af1aa75e diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 index 06ab2e7c468d..54e9d7a6fee7 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=902706d4dbc16d2bbdc95026892ef528 diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 index c93cf977bcfd..97e100038b33 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=193e23282bfd7f7751d7e37988a0ec44 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 index f373c1fd747b..5d7fb6184b24 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=c54138383c80476f9d515e5e2a33acaf diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 index 1f24ddf2816f..6b44240e5f48 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=30ddf1c7471e11d692477ffa5a3a9956 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 index e7f9118d72b5..cc0c00599995 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 _md5_=ba0cdfe4fa4ef35b15cb45a53f81f3b7 diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 index 29c4bbfb36b4..9a55f40f3603 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 @@ -12,5 +12,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci RDEPEND=!dev-build/cons !games-action/xbomber dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz https://dev.gentoo.org/~soap/distfiles/emboss-6.6.0-patches-r1.tar.xz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 readme.gentoo-r1 b045f3acf546393ab6b3170781875358 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe emboss-r3 bd98b11ffc89ab4079e13e7d634fd143 readme.gentoo-r1 b045f3acf546393ab6b3170781875358 _md5_=70b903dc25a6c63638148281283a607c diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d-r1 b/metadata/md5-cache/sci-biology/eugene-4.1d-r1 index bef7855dae69..e0cc275640ea 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1d-r1 +++ b/metadata/md5-cache/sci-biology/eugene-4.1d-r1 @@ -11,5 +11,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:= RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=88a096386941104cea7615974ecef526 diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 index 0a381763037e..dcdb0c26fba3 100644 --- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 +++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 @@ -13,5 +13,5 @@ REQUIRED_USE=test? ( utils ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=10bdf3d183405e86dbde847391344239 diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 b/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 index 75abd6cc4557..48afb23ab150 100644 --- a/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 +++ b/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos LICENSE=fasta SLOT=0 SRC_URI=https://github.com/wrpearson/fasta36/archive/refs/tags/v36.3.8h_04-May-2020.tar.gz -> fasta-36.3.8h.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=c7bc36e3bc5f8215ca7b7db642f34a74 diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.8i b/metadata/md5-cache/sci-biology/fasta-36.3.8i index 0760c845437e..dd79bdc6fa87 100644 --- a/metadata/md5-cache/sci-biology/fasta-36.3.8i +++ b/metadata/md5-cache/sci-biology/fasta-36.3.8i @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos LICENSE=fasta SLOT=0 SRC_URI=https://github.com/wrpearson/fasta36/archive/refs/tags/v36.3.8i_14-Nov-2020.tar.gz -> fasta-36.3.8i.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=7b2a3e48ed98735f92318931e4613623 diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11 index ce3d1662eb54..eb6502f82ae5 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.11 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11 @@ -10,5 +10,5 @@ LICENSE=GPL-2 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 _md5_=4a94b8db43f0aadb5ece67757ccbe635 diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 index 9b9a8eab7173..d0d7b0ff763d 100644 --- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 +++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 @@ -10,5 +10,5 @@ LICENSE=AGPL-3 RDEPEND=sci-biology/libgtextutils:= dev-perl/PerlIO-gzip dev-perl/GDGraph sci-visualization/gnuplot SLOT=0 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2 -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=e0ed8e935eca944dc874fee38c4435ad diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.6.13-r1 b/metadata/md5-cache/sci-biology/foldingathome-7.6.13-r1 index 51423d631464..3b3aefcb7f37 100644 --- a/metadata/md5-cache/sci-biology/foldingathome-7.6.13-r1 +++ b/metadata/md5-cache/sci-biology/foldingathome-7.6.13-r1 @@ -11,5 +11,5 @@ RDEPEND=acct-group/foldingathome acct-group/video acct-user/foldingathome app-ar RESTRICT=mirror bindist strip SLOT=0 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.6/fahclient_7.6.13-64bit-release.tar.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 systemd 54bd206bb5c4efac6ae28b6b006713b0 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 systemd 54bd206bb5c4efac6ae28b6b006713b0 _md5_=f2ef46b617dbd53a6e9dbdd86ff70bf1 diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.6.21 b/metadata/md5-cache/sci-biology/foldingathome-7.6.21 index 362cfde9e33b..2b18553990aa 100644 --- a/metadata/md5-cache/sci-biology/foldingathome-7.6.21 +++ b/metadata/md5-cache/sci-biology/foldingathome-7.6.21 @@ -11,5 +11,5 @@ RDEPEND=acct-group/foldingathome acct-group/video acct-user/foldingathome app-ar RESTRICT=mirror bindist strip SLOT=0 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.6/fahclient_7.6.21-64bit-release.tar.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 systemd 54bd206bb5c4efac6ae28b6b006713b0 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 systemd 54bd206bb5c4efac6ae28b6b006713b0 _md5_=50de4ff6faf3b5ac3ed140d8e1653c23 diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b index cab29c34827d..e1f6d6c514e8 100644 --- a/metadata/md5-cache/sci-biology/glimmer-3.02b +++ b/metadata/md5-cache/sci-biology/glimmer-3.02b @@ -8,5 +8,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh sci-biology/elph SLOT=0 SRC_URI=https://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=a7e8ed9c8bc30ed68f4fc465709c2e3d diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 index 184686dac609..a071a52d341c 100644 --- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 +++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 LICENSE=Artistic SLOT=0 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=d9c4659eca0b1554098b16ad1c24f82e diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.4 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.4 index 5190ec32a6e3..a9867493f411 100644 --- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.4 +++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.4 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 LICENSE=Artistic SLOT=0 SRC_URI=https://ccb.jhu.edu/software/glimmerhmm/dl/GlimmerHMM-3.0.4.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=e0e7eeca3870b5544d68c50451c63053 diff --git a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 index b7a9e25bdfd3..62bb64575378 100644 --- a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 +++ b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 @@ -10,5 +10,5 @@ LICENSE=GPL-2 RESTRICT=!test? ( test ) SLOT=2 SRC_URI=http://eddylab.org/software/hmmer/2.3.2/hmmer-2.3.2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=1fd6f0b99211b2fc58ba46d98f53bf58 diff --git a/metadata/md5-cache/sci-biology/hmmer-3.1_beta2-r1 b/metadata/md5-cache/sci-biology/hmmer-3.1_beta2-r1 index bd153b20b963..280297a65623 100644 --- a/metadata/md5-cache/sci-biology/hmmer-3.1_beta2-r1 +++ b/metadata/md5-cache/sci-biology/hmmer-3.1_beta2-r1 @@ -12,5 +12,5 @@ RDEPEND=mpi? ( virtual/mpi ) gsl? ( sci-libs/gsl:= ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=66609c69302596b8671531f5be5cf6c1 diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r2 b/metadata/md5-cache/sci-biology/iedera-1.05-r2 index 7dd95dd8f774..c3c0c945a9e8 100644 --- a/metadata/md5-cache/sci-biology/iedera-1.05-r2 +++ b/metadata/md5-cache/sci-biology/iedera-1.05-r2 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=c1df71458cdeda01ad17b744ef31dc36 diff --git a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 index 07f5697bee8e..b809772dc143 100644 --- a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 +++ b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=mpi? ( virtual/mpi ) SLOT=0 SRC_URI=ftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=ed6542a9fbe6d76d42075ee482329775 diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 b/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 index c71c310344e0..0f0e595dccb5 100644 --- a/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 +++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 @@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 _md5_=910bb7d511b17acfbd0b6cd49c0fc114 diff --git a/metadata/md5-cache/sci-biology/lagan-2.0-r4 b/metadata/md5-cache/sci-biology/lagan-2.0-r4 index e5230446a24d..e73fbd48aa80 100644 --- a/metadata/md5-cache/sci-biology/lagan-2.0-r4 +++ b/metadata/md5-cache/sci-biology/lagan-2.0-r4 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=http://lagan.stanford.edu/lagan_web/lagan20.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=c4b4e347541c85d423cac28e03a104d4 diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 index dccbc207f51b..a56301530cb9 100644 --- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 +++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=AGPL-3 SLOT=0/0 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2 -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=bf69c3370f31858d1ff072c30305ca99 diff --git a/metadata/md5-cache/sci-biology/mafft-7.490 b/metadata/md5-cache/sci-biology/mafft-7.490 index 0acdfee44186..4a245ca58bf6 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.490 +++ b/metadata/md5-cache/sci-biology/mafft-7.490 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos LICENSE=BSD SLOT=0 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.490-without-extensions-src.tgz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=04971be2bc4044a9c136d12a7e51b23d diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r4 b/metadata/md5-cache/sci-biology/maq-0.7.1-r4 index c01f339a896f..e6324ff63e4e 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r4 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r4 @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://downloads.sourceforge.net/maq/maq-0.7.1.tar.bz2 https://downloads.sourceforge.net/maq/calib-36.dat.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=3ce78ae7f9c21ec3fcfe0096f0b6f814 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 index 599180b1ce5e..3e6abaa9aaf7 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=https://downloads.sourceforge.net/maq/maqview-0.2.5.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=ff137cbddb3451a621dbf212ee4a6fe8 diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index c4fb0c7cae24..74cc02bf294b 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=9779366f51f2fea08274072a9a019159 diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30 index 6bdc226aafb3..3c6ef3dd1727 100644 --- a/metadata/md5-cache/sci-biology/mosaik-2.2.30 +++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe vcs-snapshot bd69bf57fd2c34e99964a03b1d968177 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe vcs-snapshot bd69bf57fd2c34e99964a03b1d968177 _md5_=b275a0e18dbe85d2a2e24cebc796c134 diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 index 27a379fe33eb..4cef1fb69b2a 100644 --- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 +++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 @@ -11,5 +11,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran SLOT=0 SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe fortran-2 54fcb693257134adae26819685891ecc +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe fortran-2 54fcb693257134adae26819685891ecc _md5_=4d1c6c16f8757994256f73d5be45cb8f diff --git a/metadata/md5-cache/sci-biology/mothur-1.48.0 b/metadata/md5-cache/sci-biology/mothur-1.48.0 index 807584bd7078..df41bae6fef7 100644 --- a/metadata/md5-cache/sci-biology/mothur-1.48.0 +++ b/metadata/md5-cache/sci-biology/mothur-1.48.0 @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/uchime boost? ( dev-libs/boost:=[zlib] ) gsl? ( sci-libs/gsl:= ) hdf5? ( sci-libs/hdf5:=[cxx] ) mpi? ( virtual/mpi ) SLOT=0 SRC_URI=https://github.com/mothur/mothur/archive/refs/tags/v1.48.0.tar.gz -> mothur-1.48.0.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=d735d18f460738ef3613462684b289f7 diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 index 8f4ba4977619..0a6b0878508a 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/ncurses:= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:= ) SLOT=0 SRC_URI=https://downloads.sourceforge.net/mrbayes/mrbayes-3.1.2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=ea81abd131a657bcd4c6d3199d56bdb6 diff --git a/metadata/md5-cache/sci-biology/mummer-3.23-r1 b/metadata/md5-cache/sci-biology/mummer-3.23-r1 index dd527bce95e0..35e7a3823aa9 100644 --- a/metadata/md5-cache/sci-biology/mummer-3.23-r1 +++ b/metadata/md5-cache/sci-biology/mummer-3.23-r1 @@ -9,5 +9,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh dev-lang/perl SLOT=0 SRC_URI=https://downloads.sourceforge.net/mummer/MUMmer3.23.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=6c017adea5c77f3b2646f4b5947bcd7a diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31 index c0b9e05911be..0d076a23f75e 100644 --- a/metadata/md5-cache/sci-biology/muscle-3.8.31 +++ b/metadata/md5-cache/sci-biology/muscle-3.8.31 @@ -8,5 +8,5 @@ LICENSE=public-domain RDEPEND=!sci-libs/libmuscle SLOT=0 SRC_URI=https://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=46bd2dd5a3f5b38a212ff48669d0939c diff --git a/metadata/md5-cache/sci-biology/muscle-5.1.0 b/metadata/md5-cache/sci-biology/muscle-5.1.0 index 19e60308aace..c32d2addd859 100644 --- a/metadata/md5-cache/sci-biology/muscle-5.1.0 +++ b/metadata/md5-cache/sci-biology/muscle-5.1.0 @@ -8,5 +8,5 @@ LICENSE=public-domain RDEPEND=!sci-libs/libmuscle SLOT=0 SRC_URI=https://github.com/rcedgar/muscle/archive/refs/tags/5.1.0.tar.gz -> muscle-5.1.0.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=0b354be0bdd3d1c18779910184924986 diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 index 3d917e5e61c5..2c8b0fc44baa 100644 --- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 +++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 @@ -11,5 +11,5 @@ LICENSE=BSD RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw SLOT=0 SRC_URI=https://web.archive.org/web/20120126210029if_/http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=f8324170fb990264d927dcd509f5898e diff --git a/metadata/md5-cache/sci-biology/pals-1.0-r2 b/metadata/md5-cache/sci-biology/pals-1.0-r2 index 9fef31521521..4fa4c2fb97a0 100644 --- a/metadata/md5-cache/sci-biology/pals-1.0-r2 +++ b/metadata/md5-cache/sci-biology/pals-1.0-r2 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 LICENSE=public-domain SLOT=0 SRC_URI=https://www.drive5.com/pals/pals_source.tar.gz -> pals-1.0.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=eacca1433c8023d7321f6b8d4fc4b6d4 diff --git a/metadata/md5-cache/sci-biology/paml-4.10.7 b/metadata/md5-cache/sci-biology/paml-4.10.7 index 1f5cd0604b61..11b38baf7ff4 100644 --- a/metadata/md5-cache/sci-biology/paml-4.10.7 +++ b/metadata/md5-cache/sci-biology/paml-4.10.7 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=free-noncomm SLOT=0 SRC_URI=https://github.com/abacus-gene/paml/archive/refs/tags/4.10.7.tar.gz -> paml-4.10.7.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=c8cab82916f53285a3bef1b710310019 diff --git a/metadata/md5-cache/sci-biology/paml-4.9j b/metadata/md5-cache/sci-biology/paml-4.9j index 3ee2799846ce..6b79c612b014 100644 --- a/metadata/md5-cache/sci-biology/paml-4.9j +++ b/metadata/md5-cache/sci-biology/paml-4.9j @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=free-noncomm SLOT=0 SRC_URI=http://abacus.gene.ucl.ac.uk/software/paml4.9j.tgz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=236ce838eff8e04f8059e18110b3ff38 diff --git a/metadata/md5-cache/sci-biology/phylip-3.698 b/metadata/md5-cache/sci-biology/phylip-3.698 index 3d53b157b411..75317f851f3c 100644 --- a/metadata/md5-cache/sci-biology/phylip-3.698 +++ b/metadata/md5-cache/sci-biology/phylip-3.698 @@ -10,5 +10,5 @@ LICENSE=BSD-2 RDEPEND=x11-libs/libXaw !dev-lang/elixir SLOT=0 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.698.zip -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=b3a777c086ea4a6cd489efcb5bde7b66 diff --git a/metadata/md5-cache/sci-biology/phyml-2.4.5-r4 b/metadata/md5-cache/sci-biology/phyml-2.4.5-r4 index d8369669be73..de12b637bae7 100644 --- a/metadata/md5-cache/sci-biology/phyml-2.4.5-r4 +++ b/metadata/md5-cache/sci-biology/phyml-2.4.5-r4 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~ppc ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.lirmm.fr/~guindon/phyml_v2.4.5.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=07b5d0c4fa7ccf9c50fb8bba0dca57c7 diff --git a/metadata/md5-cache/sci-biology/piler-1.0-r2 b/metadata/md5-cache/sci-biology/piler-1.0-r2 index 6007eb5eb674..cc4c91ec3e16 100644 --- a/metadata/md5-cache/sci-biology/piler-1.0-r2 +++ b/metadata/md5-cache/sci-biology/piler-1.0-r2 @@ -8,5 +8,5 @@ LICENSE=public-domain RDEPEND=|| ( sci-biology/muscle sci-libs/libmuscle ) sci-biology/pals SLOT=0 SRC_URI=http://www.drive5.com/piler/piler_source.tar.gz -> piler-1.0.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=5fc094c7ed21adb9be841a3f8cf76801 diff --git a/metadata/md5-cache/sci-biology/pilercr-1.0-r2 b/metadata/md5-cache/sci-biology/pilercr-1.0-r2 index ac8dc48032f2..1aecb046f458 100644 --- a/metadata/md5-cache/sci-biology/pilercr-1.0-r2 +++ b/metadata/md5-cache/sci-biology/pilercr-1.0-r2 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 LICENSE=public-domain SLOT=0 SRC_URI=http://www.drive5.com/pilercr/pilercr1.06.tar.gz -> pilercr-1.0.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=00fbcbaccb202c9a3276728d356746a2 diff --git a/metadata/md5-cache/sci-biology/pilercr-1.0-r3 b/metadata/md5-cache/sci-biology/pilercr-1.0-r3 index cd20df68b31d..3f37af6dc19b 100644 --- a/metadata/md5-cache/sci-biology/pilercr-1.0-r3 +++ b/metadata/md5-cache/sci-biology/pilercr-1.0-r3 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 LICENSE=public-domain SLOT=0 SRC_URI=https://www.drive5.com/pilercr/pilercr1.06.tar.gz -> pilercr-1.0.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=4f135a172d6c0d1f029006fa7cd2d203 diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 index 417df66184d9..b0dbdeb1fd4a 100644 --- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 +++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=419587bbc06b4b3717534c9c0148238b diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1 index dc08de73b80b..964e3c112988 100644 --- a/metadata/md5-cache/sci-biology/poa-2-r1 +++ b/metadata/md5-cache/sci-biology/poa-2-r1 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://downloads.sourceforge.net/poamsa/poaV2.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=f02597eeb24e8a653d2a5a2471b8225e diff --git a/metadata/md5-cache/sci-biology/prank-140603-r1 b/metadata/md5-cache/sci-biology/prank-140603-r1 index 5637851c9dee..d25938bafbb1 100644 --- a/metadata/md5-cache/sci-biology/prank-140603-r1 +++ b/metadata/md5-cache/sci-biology/prank-140603-r1 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 SLOT=0 SRC_URI=http://wasabiapp.org/download/prank/prank.source.140603.tgz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=07f1836dd1c44c4ebf19bb6a59f7141a diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.7-r1 b/metadata/md5-cache/sci-biology/primer3-2.3.7-r1 index ee65132e4bb4..6dc1b5ad68e8 100644 --- a/metadata/md5-cache/sci-biology/primer3-2.3.7-r1 +++ b/metadata/md5-cache/sci-biology/primer3-2.3.7-r1 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=GPL-2 SLOT=0 SRC_URI=https://downloads.sourceforge.net/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=97f0ac9f861df5bc03a38dea0dc29c78 diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1 index 3e78bbda89a4..28d5af8b3087 100644 --- a/metadata/md5-cache/sci-biology/probcons-1.12-r1 +++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1 @@ -8,5 +8,5 @@ LICENSE=public-domain RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot SLOT=0 SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=a0d3d7d9a640d31e0ece26e564b37dda diff --git a/metadata/md5-cache/sci-biology/prodigal-2.6.3-r1 b/metadata/md5-cache/sci-biology/prodigal-2.6.3-r1 index 752fe6c42655..0812bd0e7636 100644 --- a/metadata/md5-cache/sci-biology/prodigal-2.6.3-r1 +++ b/metadata/md5-cache/sci-biology/prodigal-2.6.3-r1 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 LICENSE=GPL-3 SLOT=0 SRC_URI=https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz -> prodigal-2.6.3.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=fbd84f84d9eeda38c197893cf2c079c8 diff --git a/metadata/md5-cache/sci-biology/pysam-0.22.1 b/metadata/md5-cache/sci-biology/pysam-0.22.1 index 069f145c9a33..821a5cc29abd 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.22.1 +++ b/metadata/md5-cache/sci-biology/pysam-0.22.1 @@ -13,5 +13,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_tar RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.22.1.tar.gz -> pysam-0.22.1.gh.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-r1 2def7a4ce233dfa344f613025c619a23 distutils-r1 85ccd3b54a6533fb120ee52b7c76a3df +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-r1 2def7a4ce233dfa344f613025c619a23 distutils-r1 85ccd3b54a6533fb120ee52b7c76a3df _md5_=a742eeecf26e6de57df273759b8491aa diff --git a/metadata/md5-cache/sci-biology/pysam-9999 b/metadata/md5-cache/sci-biology/pysam-9999 index ae7c3f69bf7a..1319a8c61925 100644 --- a/metadata/md5-cache/sci-biology/pysam-9999 +++ b/metadata/md5-cache/sci-biology/pysam-9999 @@ -12,5 +12,5 @@ RDEPEND=>=sci-libs/htslib-1.17 python_targets_python3_10? ( dev-lang/python:3.10 REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-r1 2def7a4ce233dfa344f613025c619a23 distutils-r1 85ccd3b54a6533fb120ee52b7c76a3df git-r3 875eb471682d3e1f18da124be97dcc81 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-utils-r1 42c5abe4a656a4993a06a4fc61dbdd12 python-r1 2def7a4ce233dfa344f613025c619a23 distutils-r1 85ccd3b54a6533fb120ee52b7c76a3df git-r3 875eb471682d3e1f18da124be97dcc81 _md5_=bcdb07ed2c7ed322810daba181d02da3 diff --git a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 index 15d72cda22b6..e146c158dadf 100644 --- a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 +++ b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl sci-biology/hmmer:2 SLOT=0 SRC_URI=mirror://gentoo/qrna-2.0.3c.tar.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=fdc52d5355060d858ec78d793dc26d81 diff --git a/metadata/md5-cache/sci-biology/qrna-2.0.4 b/metadata/md5-cache/sci-biology/qrna-2.0.4 index d775225b2675..a195b584f140 100644 --- a/metadata/md5-cache/sci-biology/qrna-2.0.4 +++ b/metadata/md5-cache/sci-biology/qrna-2.0.4 @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl sci-biology/hmmer:2 SLOT=0 SRC_URI=http://eddylab.org/software/qrna/qrna.tar.gz -> qrna-2.0.4.tar.gz examples? ( mirror://gentoo/qrna-2.0.3c.tar.bz2 ) -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 vcs-clean f5d76e36be67d713022315e10c51bc6c +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 vcs-clean f5d76e36be67d713022315e10c51bc6c _md5_=91103f9b3d87877fefd4920d6e91f183 diff --git a/metadata/md5-cache/sci-biology/raxml-8.2.13 b/metadata/md5-cache/sci-biology/raxml-8.2.13 index 7f60c64d80bf..3b2d9d015a95 100644 --- a/metadata/md5-cache/sci-biology/raxml-8.2.13 +++ b/metadata/md5-cache/sci-biology/raxml-8.2.13 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/stamatak/standard-RAxML/archive/refs/tags/v8.2.13.tar.gz -> raxml-8.2.13.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=b1b4de0bedc435411038a43f078ba175 diff --git a/metadata/md5-cache/sci-biology/recon-1.08-r1 b/metadata/md5-cache/sci-biology/recon-1.08-r1 index e0c6abe18862..a2e61abd449c 100644 --- a/metadata/md5-cache/sci-biology/recon-1.08-r1 +++ b/metadata/md5-cache/sci-biology/recon-1.08-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=http://www.repeatmasker.org/RECON-1.08.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=36772ec3438da03e296e39fc88b347ee diff --git a/metadata/md5-cache/sci-biology/rnaview-20040713-r5 b/metadata/md5-cache/sci-biology/rnaview-20040713-r5 index a8fe949636a1..b2879b971b17 100644 --- a/metadata/md5-cache/sci-biology/rnaview-20040713-r5 +++ b/metadata/md5-cache/sci-biology/rnaview-20040713-r5 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=public-domain SLOT=0 SRC_URI=mirror://gentoo/rnaview-20040713.tar.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=dd5336243d83138448c13acb7f4d4ba2 diff --git a/metadata/md5-cache/sci-biology/samtools-1.19.2 b/metadata/md5-cache/sci-biology/samtools-1.19.2 index d03ce10b42c0..75b51f70675f 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.19.2 +++ b/metadata/md5-cache/sci-biology/samtools-1.19.2 @@ -10,5 +10,5 @@ LICENSE=MIT RDEPEND=dev-lang/perl =sci-libs/htslib-1.19*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib SLOT=0 SRC_URI=https://github.com/samtools/samtools/releases/download/1.19.2/samtools-1.19.2.tar.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=582b7ec64e75c223a70f748cfa2d9bca diff --git a/metadata/md5-cache/sci-biology/samtools-1.20 b/metadata/md5-cache/sci-biology/samtools-1.20 index 860ceedd048e..e50d60c983ee 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.20 +++ b/metadata/md5-cache/sci-biology/samtools-1.20 @@ -10,5 +10,5 @@ LICENSE=MIT RDEPEND=dev-lang/perl =sci-libs/htslib-1.20*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib SLOT=0 SRC_URI=https://github.com/samtools/samtools/releases/download/1.20/samtools-1.20.tar.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=582b7ec64e75c223a70f748cfa2d9bca diff --git a/metadata/md5-cache/sci-biology/seaview-4.6-r1 b/metadata/md5-cache/sci-biology/seaview-4.6-r1 index 039385c96a22..ef57b873b4ed 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.6-r1 +++ b/metadata/md5-cache/sci-biology/seaview-4.6-r1 @@ -11,5 +11,5 @@ LICENSE=public-domain RDEPEND=sci-biology/clustalw:2 sci-biology/phyml || ( sci-libs/libmuscle sci-biology/muscle ) sys-libs/zlib x11-libs/fltk:1[xft?] x11-libs/libX11 xft? ( x11-libs/libXft ) SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz -_eclasses_=desktop 3a72ffe0d8e1dd73af3a1c8c15a59fed toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=desktop 3a72ffe0d8e1dd73af3a1c8c15a59fed toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=a742711d8523a4e49524662c12d647c2 diff --git a/metadata/md5-cache/sci-biology/seqan-3.1.0 b/metadata/md5-cache/sci-biology/seqan-3.1.0 index 2d697241cfd6..6aec851899e7 100644 --- a/metadata/md5-cache/sci-biology/seqan-3.1.0 +++ b/metadata/md5-cache/sci-biology/seqan-3.1.0 @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-lib REQUIRED_USE=cpu_flags_x86_sse4_2 SLOT=0 SRC_URI=https://github.com/seqan/seqan3/releases/download/3.1.0/seqan3-3.1.0-Source.tar.xz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 _md5_=327a33751512d78b13d5acd641ba3385 diff --git a/metadata/md5-cache/sci-biology/sibsim4-0.20 b/metadata/md5-cache/sci-biology/sibsim4-0.20 index 313e8826a3bc..090066057c88 100644 --- a/metadata/md5-cache/sci-biology/sibsim4-0.20 +++ b/metadata/md5-cache/sci-biology/sibsim4-0.20 @@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://downloads.sourceforge.net/sibsim4/SIBsim4-0.20.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=9b5ef2da855926e5626df0ee21cd2d67 diff --git a/metadata/md5-cache/sci-biology/sim4-20030921-r2 b/metadata/md5-cache/sci-biology/sim4-20030921-r2 index b3c37f06d976..bafc82cad1f5 100644 --- a/metadata/md5-cache/sci-biology/sim4-20030921-r2 +++ b/metadata/md5-cache/sci-biology/sim4-20030921-r2 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~ppc ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://gentoo/sim4-20030921.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=0ef9393c3dd1ae29bfbec5c3dded67aa diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1 index be6095436c7e..0cb10f00b6da 100644 --- a/metadata/md5-cache/sci-biology/stride-20011129-r1 +++ b/metadata/md5-cache/sci-biology/stride-20011129-r1 @@ -8,5 +8,5 @@ LICENSE=STRIDE RESTRICT=mirror bindist SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz -> stride-20011129.tar.gz https://dev.gentoo.org/~pacho/stride/stride-20060723-update.patch.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=a98099ba2092ac37edaa2d1816ea88a1 diff --git a/metadata/md5-cache/sci-biology/stride-20060723 b/metadata/md5-cache/sci-biology/stride-20060723 index c2585f2783ab..cb675adffd94 100644 --- a/metadata/md5-cache/sci-biology/stride-20060723 +++ b/metadata/md5-cache/sci-biology/stride-20060723 @@ -8,5 +8,5 @@ LICENSE=STRIDE RESTRICT=mirror bindist SLOT=0 SRC_URI=https://webclu.bio.wzw.tum.de/stride/stride.tar.gz -> stride-20030408.tar.gz https://dev.gentoo.org/~pacho/stride/stride-20060723-update-r1.patch.xz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=2616b211128e980f88b295ed6dfc1051 diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 index 443cd77a0614..424d4a639348 100644 --- a/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 +++ b/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=sci-biology/clustalw sci-chemistry/tm-align SLOT=0 SRC_URI=http://www.tcoffee.org/Packages/Beta/Latest/T-COFFEE_distribution_Version_11.00.4466924.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=489f3794f3d0f3e0bf26ffb6c031578d diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 index 2df9a326809a..cbd9d6dc2278 100644 --- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 +++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 @@ -12,5 +12,5 @@ RDEPEND=mpi? ( virtual/mpi ) RESTRICT=test SLOT=0 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=311ab90a26514547300841edfb24e436 diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 index a824e258ca2c..a07a3845c335 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 @@ -11,5 +11,5 @@ LICENSE=GPL-2 RDEPEND=x11-libs/wxGTK:3.2-gtk3[X] SLOT=0 SRC_URI=https://github.com/rdmpage/treeviewx/archive/7e4d0e96dfdde51a92a1634b41d7284142a19afa.tar.gz -> treeviewx-0.5.1.20100823_p4.tar.gz mirror://debian/pool/main/t/treeviewx/treeviewx_0.5.1+git20100823.7e4d0e9-4.debian.tar.xz https://dev.gentoo.org/~pacho/treeviewx/treeviewx_128.png -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe desktop 3a72ffe0d8e1dd73af3a1c8c15a59fed flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 xdg 3ef49a87c52c8b77c476351195dfe575 +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe desktop 3a72ffe0d8e1dd73af3a1c8c15a59fed flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 xdg 3ef49a87c52c8b77c476351195dfe575 _md5_=717085213272cc84290050e8716b9f37 diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 b/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 index 34d18a25c93b..c453a2410b6d 100644 --- a/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 +++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl:= SLOT=0 SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe perl-functions 1863acf0982afafc67797e3ce7275b4c +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe perl-functions 1863acf0982afafc67797e3ce7275b4c _md5_=52e449bd6a1f0b9bd42d7eaedfc1d9e6 diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 index 933fa5d7fa55..5a33867251dd 100644 --- a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 +++ b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 @@ -8,5 +8,5 @@ KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=public-domain SLOT=0 SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 _md5_=d6d5b7ba215fd8eaf51d3847f4051df6 diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 index 91bbd1eca4cf..d019d6435d7e 100644 --- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 +++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 @@ -12,5 +12,5 @@ RDEPEND=dev-libs/openssl:= media-libs/libpng:= !<sci-biology/ucsc-genome-browser REQUIRED_USE=server? ( mysql ) SLOT=0 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe webapp 5fa840db95fc7348dfd53b8526ed05f5 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe webapp 5fa840db95fc7348dfd53b8526ed05f5 _md5_=564b1da6740e56376a048a72b00d1f1a diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1 index 216b129af8a5..9d1a4540fc84 100644 --- a/metadata/md5-cache/sci-biology/unafold-3.8-r1 +++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1 @@ -10,5 +10,5 @@ LICENSE=unafold RDEPEND=media-libs/freeglut media-libs/gd virtual/opengl SLOT=0 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2 -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=14b670b7c0432a030b888744c81bd066 diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.16 b/metadata/md5-cache/sci-biology/vcftools-0.1.16 index 4af32909a7b0..4e259b5bfba9 100644 --- a/metadata/md5-cache/sci-biology/vcftools-0.1.16 +++ b/metadata/md5-cache/sci-biology/vcftools-0.1.16 @@ -11,5 +11,5 @@ LICENSE=LGPL-3 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) SLOT=0 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe perl-functions 1863acf0982afafc67797e3ce7275b4c +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe perl-functions 1863acf0982afafc67797e3ce7275b4c _md5_=faeb202e0aded0cb660ea87d6d7be81b diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10 index a8be487c217f..db941216cddb 100644 --- a/metadata/md5-cache/sci-biology/velvet-1.2.10 +++ b/metadata/md5-cache/sci-biology/velvet-1.2.10 @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe _md5_=65984f7f95bbcc7f23c26eede004c9cc diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 index 7077245244db..b6e2074cf3f3 100644 --- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 +++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 @@ -11,5 +11,5 @@ LICENSE=BSD RDEPEND=~sci-biology/hmmer-2.3.2 SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz https://dev.gentoo.org/~mgorny/dist/wise-2.4.0_alpha-patchset.tar.bz2 -_eclasses_=toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 +_eclasses_=toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 _md5_=34f9a1f8b8f239e402200b9b5cb4f3cc diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r3 b/metadata/md5-cache/sci-biology/yass-1.14-r3 index f5f4539b234a..d313b4788e42 100644 --- a/metadata/md5-cache/sci-biology/yass-1.14-r3 +++ b/metadata/md5-cache/sci-biology/yass-1.14-r3 @@ -11,5 +11,5 @@ LICENSE=GPL-2 RDEPEND=dmalloc? ( dev-libs/dmalloc ) SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz -_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs fa554cc3cff825d21dfe3f24841e29cf multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe +_eclasses_=gnuconfig ddeb9f8caff1b5f71a09c75b7534df79 toolchain-funcs 14648d8795f7779e11e1bc7cf08b7536 multilib b2a329026f2e404e9e371097dda47f96 libtool 6b28392a775f807c8be5fc7ec9a605b9 autotools 7d91cc798a8afd8f4e0c6e9587296ebe _md5_=9e0eb1b35801ce703a9a397be6421d47 |