2023-12-27 21:02:32 UTC

35 files changed, 70 insertions, 70 deletions

diff --git a/metadata/md5-cache/sci-biology/abyss-2.3.4 b/metadata/md5-cache/sci-biology/abyss-2.3.4
index a74a509748c8..b2ee8d4aa5dd 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.3.4
+++ b/metadata/md5-cache/sci-biology/abyss-2.3.4
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure prepare pretend setup
 DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3 misc-haskell? ( dev-lang/ghc )
 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
@@ -11,5 +11,5 @@ LICENSE=GPL-3
 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.3.4.tar.gz -> abyss-2.3.4.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=9a708eff89b221551fbb0bcc299ccfa3
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index be0ef067a41e..47654ce1c4c3 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=prepare
 DESCRIPTION=Blat-like Fast Accurate Search Tool
 EAPI=7
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/XML-Simple
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=e64abecddb86e9860edc80410f299d83
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r3 b/metadata/md5-cache/sci-biology/biogrep-1.0-r3
index 9d90ad6ca263..ede2804f9415 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r3
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=install prepare
 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs
 EAPI=8
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=18fc653ace8feaf53e4d1c1818b7b00c
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
index 672e6241754b..921c120dfd85 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=install prepare
 DEPEND=dev-libs/argtable
 DESCRIPTION=Scalable multiple alignment of protein sequences
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=e2928c88a8676586ff3c5e4a7f534608
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
index 37345a370a88..4987817699e0 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Applications from the CBS group
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=56469e1c3bb7c4baac8ad99638b59ff0
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
index 75ebcaf927bf..72cbb556ea94 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=864a13621791118f794da4601dcde749
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
index 575ff72d5aca..8ff0391ddf83 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=af29c98cab7134ba05c6d874e37d95dc
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
index 2089cf790a72..d1a294563e51 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=677a5e171c80e94969c1ab9c0b55e283
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
index 9baf4670e114..c80da93275b0 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=e0ca10c2776835b0cd20c1b0f0721a1a
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
index 8cfcf0c8128e..f46e0993a0e3 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=a33d45b5be798e7ebfcef8c59a300c88
diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
index 3bc495ba1118..b272a1a25ae3 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=95026ca22c2bacedf52a70b4428e7753
diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
index 64b2ad1a9755..f8de4b74f859 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=fb64fb071ec661ab550e0b33bc78b536
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
index 8c938c874744..8278571d5ded 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=06b3cb4ecb53ada6b96c0f8fe91680e9
diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
index 2c814e49cb80..d728a720dbce 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=b6d66fbfe89f6c64f635551357dc90f4
diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
index 2e5b97863178..273259d1efa2 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=93c762366f9cfe8fbfdffd0fdc0483d5
diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
index 3e5f298854ab..eb64b382f951 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein signature add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=193e23282bfd7f7751d7e37988a0ec44
diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
index de0d1ed93f40..a814b33f9976 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein structure add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=c54138383c80476f9d515e5e2a33acaf
diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
index a9ac86c264e3..ad34d18f872c 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Transmembrane protein display
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=30ddf1c7471e11d692477ffa5a3a9956
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
index c0c3ef692a40..044356f7b145 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a
 _md5_=ba0cdfe4fa4ef35b15cb45a53f81f3b7
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r2 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r2
index b30259c829ac..1eee455af36e 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r2
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r2
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install postinst prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package
@@ -12,5 +12,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
 RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz https://dev.gentoo.org/~soap/distfiles/emboss-6.6.0-patches-r1.tar.xz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a	readme.gentoo-r1	204091a2cde6179cd9d3db26d09412d3
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	emboss-r3	ed4c0b270092039c992b771a26ca322a	readme.gentoo-r1	204091a2cde6179cd9d3db26d09412d3
 _md5_=9856dbbe227d34ba8fd5a46c30dc912f
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d-r1 b/metadata/md5-cache/sci-biology/eugene-4.1d-r1
index 7e5833887bfb..9250393eaa80 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d-r1
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=prepare
 DEPEND=media-libs/gd[png] media-libs/libpng:=
 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor
@@ -11,5 +11,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:=
 RESTRICT=test
 SLOT=0
 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=88a096386941104cea7615974ecef526
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3
index 7496943a83bf..eecbf8dfbba8 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/glib:2
 DESCRIPTION=Generic tool for pairwise sequence comparison
@@ -13,5 +13,5 @@ REQUIRED_USE=test? ( utils )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=4bd132dac9c502e76b3000e9c6d1e897
diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1
index cae25a7d63d4..046dfbc3ce3c 100644
--- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1
+++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=prepare
 DEPEND=sci-biology/libgtextutils:=
 DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing
@@ -10,5 +10,5 @@ LICENSE=AGPL-3
 RDEPEND=sci-biology/libgtextutils:= dev-perl/PerlIO-gzip dev-perl/GDGraph sci-visualization/gnuplot
 SLOT=0
 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=e0ed8e935eca944dc874fee38c4435ad
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r2 b/metadata/md5-cache/sci-biology/iedera-1.05-r2
index c72ee8685e06..d80b454aa6e0 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r2
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r2
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=prepare
 DESCRIPTION=Subset seed design tool for DNA sequence alignment
 EAPI=8
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=c1df71458cdeda01ad17b744ef31dc36
diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1
index f8c4c2ca23cd..54718a656c13 100644
--- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1
+++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=install prepare
 DESCRIPTION=Gordon Text utils Library
 EAPI=8
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=AGPL-3
 SLOT=0/0
 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=bf69c3370f31858d1ff072c30305ca99
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r3 b/metadata/md5-cache/sci-biology/maq-0.7.1-r3
index e908550ccd59..b6a1eb7bf5dc 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r3
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=install prepare
 DEPEND=sys-libs/zlib
 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes
@@ -10,5 +10,5 @@ LICENSE=GPL-3
 RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=063e8f4add19e5b685018dfb11be0196
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r4 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r4
index e9e837d80628..b910a71488ea 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r4
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r4
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=prepare
 DEPEND=media-libs/freeglut sys-libs/zlib
 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler
@@ -10,5 +10,5 @@ LICENSE=GPL-3
 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=ce6e22a8dca500f24263e27d73b9eda4
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index bbac185512b8..859cbe107701 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure prepare
 DESCRIPTION=A Markov Cluster Algorithm implementation
 EAPI=7
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=9779366f51f2fea08274072a9a019159
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
index aabbd0c0a092..83b64d661e5d 100644
--- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
+++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=xml? ( dev-libs/libxml2 )
 DESCRIPTION=Tools for processing phylogenetic trees
@@ -11,5 +11,5 @@ LICENSE=BSD
 RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw
 SLOT=0
 SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=fac40fe86b457a75883a5eb465ce18d8
diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1
index 3c89ce205e2e..6b99d09ae1a8 100644
--- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1
+++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=compile configure install prepare
 DEPEND=mpi? ( virtual/mpi )
 DESCRIPTION=Maximum likelihood analysis for nucleotide, amino acid, and two-state data
@@ -12,5 +12,5 @@ RDEPEND=mpi? ( virtual/mpi )
 RESTRICT=test
 SLOT=0
 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=311ab90a26514547300841edfb24e436
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index 9a3e810ea5e1..facce777dab5 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure prepare
 DEPEND=x11-libs/wxGTK:3.0[X]
 DESCRIPTION=A phylogenetic tree viewer
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=x11-libs/wxGTK:3.0[X]
 SLOT=0
 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	wxwidgets	9a707a3f9f1ea7aa703b1e46552291e5
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	wxwidgets	9a707a3f9f1ea7aa703b1e46552291e5
 _md5_=c7a6fb1f3ee6436d674328487c021a24
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4
index e5f7acdfe00a..b7590f818acd 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure install prepare
 DEPEND=x11-libs/wxGTK:3.2-gtk3[X]
 DESCRIPTION=A phylogenetic tree viewer
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=x11-libs/wxGTK:3.2-gtk3[X]
 SLOT=0
 SRC_URI=https://github.com/rdmpage/treeviewx/archive/7e4d0e96dfdde51a92a1634b41d7284142a19afa.tar.gz -> treeviewx-0.5.1.20100823_p4.tar.gz mirror://debian/pool/main/t/treeviewx/treeviewx_0.5.1+git20100823.7e4d0e9-4.debian.tar.xz https://dev.gentoo.org/~pacho/treeviewx/treeviewx_128.png
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	desktop	021728fdc1b03b36357dbc89489e0f0d	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	wxwidgets	9a707a3f9f1ea7aa703b1e46552291e5
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	desktop	021728fdc1b03b36357dbc89489e0f0d	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	wxwidgets	9a707a3f9f1ea7aa703b1e46552291e5
 _md5_=e2772b24de3b6a5dd5f2a01d4d9d90db
diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1
index be3725035b48..346c770f3a12 100644
--- a/metadata/md5-cache/sci-biology/unafold-3.8-r1
+++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/autoconf-archive sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/autoconf-archive sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure prepare
 DEPEND=media-libs/freeglut media-libs/gd virtual/opengl
 DESCRIPTION=Unified Nucleic Acid Folding and hybridization package
@@ -10,5 +10,5 @@ LICENSE=unafold
 RDEPEND=media-libs/freeglut media-libs/gd virtual/opengl
 SLOT=0
 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5
 _md5_=9559cbf8e26b94caa53077c0b5e2c89c
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.16 b/metadata/md5-cache/sci-biology/vcftools-0.1.16
index 442cdaa225a4..420319cb53f8 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.16
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.16
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure prepare
 DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 DESCRIPTION=Tools for working with VCF (Variant Call Format) files
@@ -11,5 +11,5 @@ LICENSE=LGPL-3
 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz
-_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	6ae9a4347149b19a112caa1182d03bde	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	perl-functions	c3fca037246e877693badea0df3b0ef8
+_eclasses_=gnuconfig	b6b3e92f8b8c996400074b5f61a59256	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	multilib	c19072c3cd7ac5cb21de013f7e9832e0	libtool	9d3a9a889a6fa62ae794f817c156491b	autotools	5f729b9cb10d5eda573cd604c93c6dc5	flag-o-matic	78cf3cc2d5572fddf5e5e10c70f7c81a	perl-functions	c3fca037246e877693badea0df3b0ef8
 _md5_=faeb202e0aded0cb660ea87d6d7be81b
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r3 b/metadata/md5-cache/sci-biology/yass-1.14-r3
index bb4a9ae11190..d89b83eae9ef 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r3
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) >=sys-devel/autoconf-2.71-r5 >=sys-devel/libtool-2.4.7
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.5:1.16 ) || ( >=sys-devel/autoconf-2.72-r1:2.72 >=sys-devel/autoconf-2.71-r6:2.71 ) >=sys-devel/libtool-2.4.7
 DEFINED_PHASES=configure prepare
 DEPEND=dmalloc? ( dev-libs/dmalloc )
 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds
@@ -11,5 +11,5 @@ LICENSE=GPL-2
 RDEPEND=dmalloc? ( dev-libs/dmalloc )
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
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