diff options
Diffstat (limited to 'metadata/md5-cache')
53 files changed, 161 insertions, 188 deletions
diff --git a/metadata/md5-cache/app-forensics/afl-2.19b b/metadata/md5-cache/app-forensics/afl-2.19b deleted file mode 100644 index 506634f9dd50..000000000000 --- a/metadata/md5-cache/app-forensics/afl-2.19b +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=compile install -DEPEND=sys-devel/gcc:* sys-devel/clang -DESCRIPTION=american fuzzy lop - compile-time instrumentation fuzzer -EAPI=5 -HOMEPAGE=http://lcamtuf.coredump.cx/afl/ -KEYWORDS=~amd64 -LICENSE=Apache-2.0 -RDEPEND=sys-devel/gcc:* sys-devel/clang -SLOT=0 -SRC_URI=http://lcamtuf.coredump.cx/afl/releases/afl-2.19b.tgz -_eclass_exported_funcs=src_compile:- src_install:- -_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=778246581691591337efbb8126cc337f diff --git a/metadata/md5-cache/app-forensics/afl-2.32b b/metadata/md5-cache/app-forensics/afl-2.32b deleted file mode 100644 index b4107e1ec423..000000000000 --- a/metadata/md5-cache/app-forensics/afl-2.32b +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=compile install -DEPEND=sys-devel/gcc:* sys-devel/clang -DESCRIPTION=american fuzzy lop - compile-time instrumentation fuzzer -EAPI=5 -HOMEPAGE=http://lcamtuf.coredump.cx/afl/ -KEYWORDS=~amd64 -LICENSE=Apache-2.0 -RDEPEND=sys-devel/gcc:* sys-devel/clang -SLOT=0 -SRC_URI=http://lcamtuf.coredump.cx/afl/releases/afl-2.32b.tgz -_eclass_exported_funcs=src_compile:- src_install:- -_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=778246581691591337efbb8126cc337f diff --git a/metadata/md5-cache/app-forensics/afl-2.12b b/metadata/md5-cache/app-forensics/afl-2.39b index 8554577a5ded..30a229b9e3cd 100644 --- a/metadata/md5-cache/app-forensics/afl-2.12b +++ b/metadata/md5-cache/app-forensics/afl-2.39b @@ -7,7 +7,7 @@ KEYWORDS=~amd64 LICENSE=Apache-2.0 RDEPEND=sys-devel/gcc:* sys-devel/clang SLOT=0 -SRC_URI=http://lcamtuf.coredump.cx/afl/releases/afl-2.12b.tgz +SRC_URI=http://lcamtuf.coredump.cx/afl/releases/afl-2.39b.tgz _eclass_exported_funcs=src_compile:- src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=4f5bef387beda602f74b5f00946f2f50 +_md5_=3bc76e0abaf1d8018dadf7e583d63fde diff --git a/metadata/md5-cache/dev-python/elasticsearch-curator-4.2.6 b/metadata/md5-cache/dev-python/elasticsearch-curator-4.2.6 new file mode 100644 index 000000000000..f83aef251a8a --- /dev/null +++ b/metadata/md5-cache/dev-python/elasticsearch-curator-4.2.6 @@ -0,0 +1,15 @@ +DEFINED_PHASES=compile configure install postinst prepare test +DEPEND=dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/sphinx[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/pyyaml-3.10[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] test? ( >=dev-python/elasticsearch-py-2.4.0[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] <dev-python/elasticsearch-py-3.0.0[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/click-6.0[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/certifi-2017.1.23[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/urllib3-1.8.3[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/voluptuous-0.9.3[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] virtual/jre:1.8 dev-python/mock[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/coverage[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/nosexcover[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/six[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] +DESCRIPTION=Tending time-series indices in Elasticsearch +EAPI=6 +HOMEPAGE=https://github.com/elasticsearch/curator +IUSE=doc test python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 +KEYWORDS=~amd64 ~x86 +LICENSE=Apache-2.0 +RDEPEND=>=dev-python/elasticsearch-py-2.4.0[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] <dev-python/elasticsearch-py-3.0.0[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/click-6.0[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/certifi-2017.1.23[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/urllib3-1.8.3[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] >=dev-python/voluptuous-0.9.3[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] +REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 ) +SLOT=0 +SRC_URI=https://github.com/elasticsearch/curator/archive/v4.2.6.tar.gz -> elasticsearch-curator-4.2.6.tar.gz test? ( https://artifacts.elastic.co/downloads/elasticsearch/elasticsearch-5.1.2.tar.gz ) +_eclass_exported_funcs=pkg_postinst:- src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1 +_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48 +_md5_=02c3555e94853c9bd56da4a39d625675 diff --git a/metadata/md5-cache/gnome-extra/evolution-data-server-3.22.4 b/metadata/md5-cache/gnome-extra/evolution-data-server-3.22.4 new file mode 100644 index 000000000000..4e8085252911 --- /dev/null +++ b/metadata/md5-cache/gnome-extra/evolution-data-server-3.22.4 @@ -0,0 +1,16 @@ +DEFINED_PHASES=compile configure install postinst postrm preinst prepare setup test +DEPEND=>=app-crypt/gcr-3.4 >=app-crypt/libsecret-0.5[crypt] >=dev-db/sqlite-3.7.17:= >=dev-libs/glib-2.46:2 >=dev-libs/libgdata-0.10:= >=dev-libs/libical-0.43:= >=dev-libs/libxml2-2 >=dev-libs/nspr-4.4:= >=dev-libs/nss-3.9:= >=net-libs/libsoup-2.42:2.4 dev-libs/icu:= sys-libs/zlib:= virtual/libiconv berkdb? ( >=sys-libs/db-4:= ) gtk? ( >=app-crypt/gcr-3.4[gtk] >=x11-libs/gtk+-3.10:3 ) google? ( >=dev-libs/json-glib-1.0.4 >=dev-libs/libgdata-0.15.1:= >=net-libs/webkit-gtk-2.11.91:4 ) gnome-online-accounts? ( >=net-libs/gnome-online-accounts-3.8:= ) introspection? ( >=dev-libs/gobject-introspection-0.9.12:= ) kerberos? ( virtual/krb5:= ) ldap? ( >=net-nds/openldap-2:= ) weather? ( >=dev-libs/libgweather-3.10:2= ) || ( dev-lang/python:3.5 dev-lang/python:3.4 >=dev-lang/python-2.7.5-r2:2.7 virtual/pypy:0 ) dev-util/gdbus-codegen dev-util/gperf >=dev-util/gtk-doc-am-1.14 >=dev-util/intltool-0.35.5 >=gnome-base/gnome-common-2 >=sys-devel/gettext-0.17 virtual/pkgconfig vala? ( || ( dev-lang/vala:0.34[vapigen(+)] dev-lang/vala:0.32[vapigen(+)] dev-lang/vala:0.30[vapigen(+)] dev-lang/vala:0.28[vapigen(+)] dev-lang/vala:0.26[vapigen(+)] ) ) app-arch/xz-utils >=sys-apps/sed-4 dev-util/desktop-file-utils x11-misc/shared-mime-info virtual/pkgconfig test? ( !prefix? ( x11-base/xorg-server[xvfb] ) x11-apps/xhost ) +DESCRIPTION=Evolution groupware backend +EAPI=6 +HOMEPAGE=https://wiki.gnome.org/Apps/Evolution +IUSE=api-doc-extras berkdb +gnome-online-accounts +gtk google +introspection ipv6 ldap kerberos vala +weather test +KEYWORDS=~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x86-solaris +LICENSE=|| ( LGPL-2 LGPL-3 ) BSD Sleepycat +RDEPEND=>=app-crypt/gcr-3.4 >=app-crypt/libsecret-0.5[crypt] >=dev-db/sqlite-3.7.17:= >=dev-libs/glib-2.46:2 >=dev-libs/libgdata-0.10:= >=dev-libs/libical-0.43:= >=dev-libs/libxml2-2 >=dev-libs/nspr-4.4:= >=dev-libs/nss-3.9:= >=net-libs/libsoup-2.42:2.4 dev-libs/icu:= sys-libs/zlib:= virtual/libiconv berkdb? ( >=sys-libs/db-4:= ) gtk? ( >=app-crypt/gcr-3.4[gtk] >=x11-libs/gtk+-3.10:3 ) google? ( >=dev-libs/json-glib-1.0.4 >=dev-libs/libgdata-0.15.1:= >=net-libs/webkit-gtk-2.11.91:4 ) gnome-online-accounts? ( >=net-libs/gnome-online-accounts-3.8:= ) introspection? ( >=dev-libs/gobject-introspection-0.9.12:= ) kerberos? ( virtual/krb5:= ) ldap? ( >=net-nds/openldap-2:= ) weather? ( >=dev-libs/libgweather-3.10:2= ) +REQUIRED_USE=vala? ( introspection ) +RESTRICT=test +SLOT=0/59 +SRC_URI=mirror://gnome/sources/evolution-data-server/3.22/evolution-data-server-3.22.4.tar.xz +_eclass_exported_funcs=pkg_preinst:gnome2 pkg_postrm:gnome2 pkg_postinst:gnome2 pkg_setup:- src_prepare:- src_configure:- src_compile:gnome2 src_test:- src_install:- +_eclasses_=db-use a4966c7f4f7df444ead1212848c13cc9 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 gnome.org ad34f378a3d57a6f2f2b8b4aaca4543e gnome2 c4ea6f9f250b5355e9e948e7007dead0 gnome2-utils c6dcdf3a2c22b578b16adb945dc85c35 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 python-any-r1 1c20f9b800324335a8e3b137363362e8 python-utils-r1 d275302cd06aedef2ba08f81f3104206 systemd 5b6ca8b2fc1307ca593223f327342c96 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 vala ca3f1c504058f5de407febddfae73167 versionator 99ae9d758cbe7cfed19170e7d48f5a9c virtualx 86c9305a59b3e0459e7fbef3a5f30b96 xdg a5c4c5ce4f5ce9a2e777f5d9a40a8723 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48 +_md5_=38a3b7d431d30c6cf822a90fb4c94bdb diff --git a/metadata/md5-cache/mail-client/evolution-3.22.4 b/metadata/md5-cache/mail-client/evolution-3.22.4 new file mode 100644 index 000000000000..927981a25884 --- /dev/null +++ b/metadata/md5-cache/mail-client/evolution-3.22.4 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile configure install postinst postrm preinst prepare +DEPEND=>=app-crypt/gcr-3.4:= >=app-text/enchant-1.1.7 >=dev-libs/glib-2.46:2[dbus] >=dev-libs/libxml2-2.7.3:2 >=gnome-base/gnome-desktop-2.91.3:3= >=gnome-base/gsettings-desktop-schemas-2.91.92 >=gnome-extra/evolution-data-server-3.22.4:=[gtk,weather?] >=media-libs/libcanberra-0.25[gtk3] >=net-libs/libsoup-2.42:2.4 >=net-libs/webkit-gtk-2.13.90:4 >=x11-libs/cairo-1.9.15:=[glib] >=x11-libs/gdk-pixbuf-2.24:2 >=x11-libs/gtk+-3.10:3 >=x11-libs/libnotify-0.7:= >=x11-misc/shared-mime-info-0.22 >=app-text/iso-codes-0.49 dev-libs/atk gnome-base/dconf dev-libs/libical:= x11-libs/libSM x11-libs/libICE crypt? ( >=app-crypt/gnupg-1.4 || ( app-crypt/pinentry[gnome-keyring] app-crypt/pinentry[gtk] app-crypt/pinentry[qt4] app-crypt/pinentry[qt5] ) x11-libs/libcryptui ) geolocation? ( >=media-libs/libchamplain-0.12:0.12[gtk] >=media-libs/clutter-1.0.0:1.0 >=media-libs/clutter-gtk-0.90:1.0 >=sci-geosciences/geocode-glib-3.10.0 x11-libs/mx:1.0 ) ldap? ( >=net-nds/openldap-2:= ) spell? ( app-text/gtkspell:3 ) ssl? ( >=dev-libs/nspr-4.6.1:= >=dev-libs/nss-3.11:= ) weather? ( >=dev-libs/libgweather-3.10:2= ) app-text/docbook-xml-dtd:4.1.2 app-text/yelp-tools >=dev-util/gtk-doc-am-1.14 >=dev-util/intltool-0.40.0 >=gnome-base/gnome-common-2.12 virtual/pkgconfig app-arch/xz-utils >=sys-apps/sed-4 dev-util/desktop-file-utils x11-misc/shared-mime-info +DESCRIPTION=Integrated mail, addressbook and calendaring functionality +EAPI=6 +HOMEPAGE=https://wiki.gnome.org/Apps/Evolution +IUSE=+bogofilter crypt geolocation highlight ldap spamassassin spell ssl +weather +KEYWORDS=~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~x86 ~x86-fbsd +LICENSE=|| ( LGPL-2 LGPL-3 ) CC-BY-SA-3.0 FDL-1.3+ OPENLDAP +RDEPEND=>=app-crypt/gcr-3.4:= >=app-text/enchant-1.1.7 >=dev-libs/glib-2.46:2[dbus] >=dev-libs/libxml2-2.7.3:2 >=gnome-base/gnome-desktop-2.91.3:3= >=gnome-base/gsettings-desktop-schemas-2.91.92 >=gnome-extra/evolution-data-server-3.22.4:=[gtk,weather?] >=media-libs/libcanberra-0.25[gtk3] >=net-libs/libsoup-2.42:2.4 >=net-libs/webkit-gtk-2.13.90:4 >=x11-libs/cairo-1.9.15:=[glib] >=x11-libs/gdk-pixbuf-2.24:2 >=x11-libs/gtk+-3.10:3 >=x11-libs/libnotify-0.7:= >=x11-misc/shared-mime-info-0.22 >=app-text/iso-codes-0.49 dev-libs/atk gnome-base/dconf dev-libs/libical:= x11-libs/libSM x11-libs/libICE crypt? ( >=app-crypt/gnupg-1.4 || ( app-crypt/pinentry[gnome-keyring] app-crypt/pinentry[gtk] app-crypt/pinentry[qt4] app-crypt/pinentry[qt5] ) x11-libs/libcryptui ) geolocation? ( >=media-libs/libchamplain-0.12:0.12[gtk] >=media-libs/clutter-1.0.0:1.0 >=media-libs/clutter-gtk-0.90:1.0 >=sci-geosciences/geocode-glib-3.10.0 x11-libs/mx:1.0 ) ldap? ( >=net-nds/openldap-2:= ) spell? ( app-text/gtkspell:3 ) ssl? ( >=dev-libs/nspr-4.6.1:= >=dev-libs/nss-3.11:= ) weather? ( >=dev-libs/libgweather-3.10:2= ) bogofilter? ( mail-filter/bogofilter ) highlight? ( app-text/highlight ) spamassassin? ( mail-filter/spamassassin ) !gnome-extra/evolution-exchange +SLOT=2.0 +SRC_URI=mirror://gnome/sources/evolution/3.22/evolution-3.22.4.tar.xz +_eclass_exported_funcs=pkg_preinst:gnome2 pkg_postrm:gnome2 pkg_postinst:- src_prepare:gnome2 src_configure:- src_compile:gnome2 src_install:- +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 gnome.org ad34f378a3d57a6f2f2b8b4aaca4543e gnome2 c4ea6f9f250b5355e9e948e7007dead0 gnome2-utils c6dcdf3a2c22b578b16adb945dc85c35 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 readme.gentoo-r1 03878c06495db70bc36bd717383c09f7 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c xdg a5c4c5ce4f5ce9a2e777f5d9a40a8723 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48 +_md5_=ff1a2e58dfb6b35721ade07d786c4350 diff --git a/metadata/md5-cache/sci-biology/aaindex-9.1 b/metadata/md5-cache/sci-biology/aaindex-9.1 index a666d0ee10e3..715238259c93 100644 --- a/metadata/md5-cache/sci-biology/aaindex-9.1 +++ b/metadata/md5-cache/sci-biology/aaindex-9.1 @@ -4,10 +4,10 @@ DESCRIPTION=Amino acid indices and similarity matrices EAPI=0 HOMEPAGE=http://www.genome.ad.jp/aaindex IUSE=emboss minimal -KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris LICENSE=public-domain RDEPEND=emboss? ( sci-biology/emboss ) SLOT=0 SRC_URI=mirror://gentoo/aaindex-9.1.tar.bz2 _eclass_exported_funcs=src_compile:- src_install:- -_md5_=24c7fa19ef1b5a56372be50a08ad31e8 +_md5_=a0ae0066224c63807c6b983a13f12686 diff --git a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 index 0a6597a837d0..1497aab7cfcd 100644 --- a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 +++ b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 @@ -1,15 +1,15 @@ DEFINED_PHASES=compile configure install prepare setup test unpack -DEPEND=test? ( ruby_targets_ruby20? ( dev-ruby/libxml[ruby_targets_ruby20] ) ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ) ruby_targets_ruby20? ( dev-lang/ruby:2.0 ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby20? ( doc? ( dev-ruby/rake[ruby_targets_ruby20] ) ) ruby_targets_ruby21? ( doc? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby20? ( test? ( dev-ruby/rake[ruby_targets_ruby20] ) ) ruby_targets_ruby21? ( test? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) test? ( ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ) +DEPEND=test? ( ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby21? ( doc? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby21? ( test? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) test? ( ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ) DESCRIPTION=An integrated environment for bioinformatics using the Ruby language EAPI=5 HOMEPAGE=http://www.bioruby.org/ -IUSE=test elibc_FreeBSD ruby_targets_ruby20 ruby_targets_ruby21 doc test test +IUSE=test elibc_FreeBSD ruby_targets_ruby21 doc test test KEYWORDS=amd64 ~ppc x86 LICENSE=Ruby -RDEPEND=ruby_targets_ruby20? ( dev-ruby/libxml[ruby_targets_ruby20] ) ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ruby_targets_ruby20? ( dev-lang/ruby:2.0 ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) -REQUIRED_USE=|| ( ruby_targets_ruby20 ruby_targets_ruby21 ) +RDEPEND=ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) +REQUIRED_USE=|| ( ruby_targets_ruby21 ) SLOT=0 SRC_URI=http://www.bioruby.org/archive/bioruby-1.4.3.0001.tar.gz _eclass_exported_funcs=pkg_setup:ruby-ng src_unpack:ruby-ng src_prepare:ruby-ng src_configure:ruby-ng src_compile:ruby-ng src_test:ruby-ng src_install:ruby-ng _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 java-utils-2 a50950a73b5d5db46f42638e2996a087 multilib 165fc17c38d1b11dac2008280dab6e80 ruby-fakegem 2b249022d4895a29827658b7d630c461 ruby-ng 934780d41ab18a9ff091703f511371be ruby-utils 382c3a262907e1219a21618dfd1a01a0 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=4ab8a9ff8fdd6d20d05074f7ecf49b06 +_md5_=d8614d35c647d88074abb160e8e8f991 diff --git a/metadata/md5-cache/sci-biology/bioruby-9999 b/metadata/md5-cache/sci-biology/bioruby-9999 index 8d5f799c9588..5da0f942832f 100644 --- a/metadata/md5-cache/sci-biology/bioruby-9999 +++ b/metadata/md5-cache/sci-biology/bioruby-9999 @@ -1,13 +1,13 @@ DEFINED_PHASES=compile configure install prepare setup test unpack -DEPEND=test? ( ruby_targets_ruby20? ( dev-ruby/libxml[ruby_targets_ruby20] ) ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ) dev-vcs/git ruby_targets_ruby20? ( dev-lang/ruby:2.0 ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby20? ( doc? ( dev-ruby/rake[ruby_targets_ruby20] ) ) ruby_targets_ruby21? ( doc? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby20? ( test? ( dev-ruby/rake[ruby_targets_ruby20] ) ) ruby_targets_ruby21? ( test? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) test? ( ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ) +DEPEND=test? ( ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ) dev-vcs/git ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby21? ( doc? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby21? ( test? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) test? ( ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ) DESCRIPTION=An integrated environment for bioinformatics using the Ruby language EAPI=5 HOMEPAGE=http://www.bioruby.org/ -IUSE=test elibc_FreeBSD ruby_targets_ruby20 ruby_targets_ruby21 doc test test +IUSE=test elibc_FreeBSD ruby_targets_ruby21 doc test test LICENSE=Ruby -RDEPEND=ruby_targets_ruby20? ( dev-ruby/libxml[ruby_targets_ruby20] ) ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ruby_targets_ruby20? ( dev-lang/ruby:2.0 ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) -REQUIRED_USE=|| ( ruby_targets_ruby20 ruby_targets_ruby21 ) +RDEPEND=ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) +REQUIRED_USE=|| ( ruby_targets_ruby21 ) SLOT=0 _eclass_exported_funcs=pkg_setup:ruby-ng src_unpack:ruby-ng src_prepare:ruby-ng src_configure:ruby-ng src_compile:ruby-ng src_test:ruby-ng src_install:ruby-ng _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 git-2 7af5d170bfc02983b4bcd3167dc5edd4 java-utils-2 a50950a73b5d5db46f42638e2996a087 multilib 165fc17c38d1b11dac2008280dab6e80 ruby-fakegem 2b249022d4895a29827658b7d630c461 ruby-ng 934780d41ab18a9ff091703f511371be ruby-utils 382c3a262907e1219a21618dfd1a01a0 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=fae3d419139a3e08019e87e0bff2d4a4 +_md5_=503479eaed54d2d406b4773a81eb2364 diff --git a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1 b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1 index de39a156ad28..fd65ebe935f3 100644 --- a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1 +++ b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1 @@ -1,6 +1,6 @@ DEFINED_PHASES=install prepare DEPEND=virtual/mpi -DESCRIPTION=A parallel (MPI) implemention of the Clustal-W general purpose multiple alignment algorithm +DESCRIPTION=An MPI implemention of the ClustalW general purpose multiple alignment algorithm EAPI=4 HOMEPAGE=http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php IUSE=mpi_njtree static_pairalign @@ -11,4 +11,4 @@ SLOT=0 SRC_URI=http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/clustalw-mpi-0.13.tar.gz _eclass_exported_funcs=src_prepare:- src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=35aeabe13c3f17845ebe48287b554312 +_md5_=eb223b777129d5549206f5147ac38017 diff --git a/metadata/md5-cache/sci-biology/cutg-160-r1 b/metadata/md5-cache/sci-biology/cutg-160-r1 index adb97d0f3c88..a8dfaf992bc3 100644 --- a/metadata/md5-cache/sci-biology/cutg-160-r1 +++ b/metadata/md5-cache/sci-biology/cutg-160-r1 @@ -4,11 +4,11 @@ DESCRIPTION=Codon usage tables calculated from GenBank EAPI=5 HOMEPAGE=http://www.kazusa.or.jp/codon/ IUSE=emboss minimal -KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris LICENSE=public-domain RDEPEND=emboss? ( sci-biology/emboss ) RESTRICT=binchecks strip SLOT=0 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/cutg-160.tar.xz _eclass_exported_funcs=src_compile:- src_install:- -_md5_=8841e19b9fa19461b5074b6156cf819c +_md5_=401c5574e0d6dc09f68f29f5f5d52e08 diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4 index 85a08a714066..b369dd70106f 100644 --- a/metadata/md5-cache/sci-biology/diya-1.0_rc4 +++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4 @@ -1,6 +1,6 @@ DEFINED_PHASES=compile configure install prepare test unpack DEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple dev-lang/perl:=[-build(-)] -DESCRIPTION=Do It Yourself Annotation, a collection of tools and libraries for sequence assembly and annotation +DESCRIPTION=Do It Yourself Annotation, tools & libraries for sequence assembly & annotation EAPI=5 HOMEPAGE=http://gmod.org/wiki/Diya IUSE=-minimal @@ -11,4 +11,4 @@ SLOT=0 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be -_md5_=fa0fc42a99b6d4398e74da15f5fa8b3e +_md5_=16dfb2a9bc2909ed5a54439d11121ed9 diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.650 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.650 index 15e9ed6c65b1..7f897884bebb 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.650 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Applications from the CBS group EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz -> embassy-cbstools-1.0.0.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=186a646a01796d80e96382eda18890f6 +_md5_=6eae9394bd91919f0c54ba878b45d282 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.650 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.650 index 5cbeb6f21b99..570ad542f27c 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.650 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.650.tar.gz -> embassy-domainatrix-0.1.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=63b5b0b16a577be381e2872c78742942 +_md5_=f736efc9a0d54c15287c4568ae92cc89 diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.650 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.650 index e295e894c8b6..30260a883432 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.650 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.650.tar.gz -> embassy-domalign-0.1.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=af2fa82680f0057751ab091d1c0de659 +_md5_=591dbe3b62f9f982e9210240a7d1b058 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.650 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.650 index 993d0f09f0f2..e113898cde69 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.650 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.650.tar.gz -> embassy-domsearch-0.1.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=4f3855b8861141c88bf0c4c267e34074 +_md5_=558125dbfa6d16a6d69173daed9737ba diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.650-r1 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.650-r1 index 0e37f0e7c848..88e2421977ec 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.650-r1 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.650-r1 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=ncurses mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.650.tar.gz -> embassy-emnu-1.05.650-r1.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=8dbc38e69d33e3dab2515755b7bdb388 +_md5_=db812aed94aff316136bcc83d72c81a9 diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.650 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.650 index c0b4a43c7abb..6791932f91bd 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.650 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DN EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.650.tar.gz -> embassy-esim4-1.0.0.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=372a55d64865de9d88f2b796cfe2c8e6 +_md5_=3291ebe6067998a61af3153e0082e8cc diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.650 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.650 index bb5889deebce..0162ab12aafa 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.650 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Wrappers for HMMER - Biological sequenc EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.650.tar.gz -> embassy-hmmer-2.3.2.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=b64d4a79867d45d7cc2bad22451b0d0b +_md5_=e12b746307d0b82a09d87f42f7723416 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.650 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.650 index 3d1b959c455d..4d0e250bd019 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.650 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on pac EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.650.tar.gz -> embassy-iprscan-4.3.1.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=2be3be220e11153b8999ac69cad1485c +_md5_=482c6d6e531cc837b469bc59d01d4387 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.650 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.650 index 9bbe7d044445..5096b3dbf62d 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.650 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=ncurses mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.650.tar.gz -> embassy-mse-3.0.0.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:- _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=c282ceaf2e8cc53eba54fac7023c9a60 +_md5_=6f1a588dbd7267152ce2e44955adb931 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.650 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.650 index 87e07794ebe0..2860b6f789be 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.650 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 freedist RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.650.tar.gz -> embassy-phylipnew-3.69.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=27ce1ba3779bb97b11294e369862e616 +_md5_=893550e3f9483b2416994637c0e1a31a diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.650 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.650 index da2e103ce776..add9fe20c8da 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.650 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Protein signature add-on package EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.650.tar.gz -> embassy-signature-0.1.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=5dac08ee358b394884c4fe4b53a1f065 +_md5_=b357e0cda6afdf55948e6e37f0447ef5 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.650 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.650 index 7b00920637b7..8b6133fcd625 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.650 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Protein structure add-on package EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.650.tar.gz -> embassy-structure-0.1.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=a6af3b3439050d2ecb65956c012c92ba +_md5_=7f4900c01df459706e80f9919fa898a8 diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.650 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.650 index 4db5bcba51bd..5287c7b6452b 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.650 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Transmembrane protein display EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.650.tar.gz -> embassy-topo-2.0.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=0edf6a1e13a42a6a8bc4050386b71ddd +_md5_=975e6be6108d44dc96c33e700eaa31c0 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.650 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.650 index d064b9bd59b6..8b41050cadd0 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.650 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.650 @@ -4,11 +4,11 @@ DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=mysql pdf png postgres static-libs X -KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.650.tar.gz -> embassy-vienna-1.7.2.650.tar.gz _eclass_exported_funcs=src_prepare:emboss-r1 src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=ebea12eb95dc9f0deba32a8853c44f7c +_md5_=f921cf229de23bb26bba12e47b4caad1 diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0 b/metadata/md5-cache/sci-biology/emboss-6.6.0 index 6745daab3bc0..e14a3153c268 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0 @@ -4,7 +4,7 @@ DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence anal EAPI=5 HOMEPAGE=http://emboss.sourceforge.net/ IUSE=minimal mysql pdf png postgres static-libs X -KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=LGPL-2 GPL-2 Apache-2.0 GPL-3+ CC-BY-3.0 PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci-biology/prints sci-biology/prosite sci-biology/rebase ) RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) @@ -12,4 +12,4 @@ SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:- _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb emboss-r1 4845d0df55fa82758c20d0fb0ef1a2a2 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 readme.gentoo-r1 03878c06495db70bc36bd717383c09f7 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=890cbd4e13b0051be2ccb8969f15be24 +_md5_=e1d694291a9d08c9d9028bffb2ad5845 diff --git a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3 b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3 index c535e4c818e6..d781b651f258 100644 --- a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3 +++ b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3 @@ -3,9 +3,9 @@ DESCRIPTION=Sequence analysis using profile hidden Markov models EAPI=6 HOMEPAGE=http://hmmer.janelia.org/ IUSE=threads test -KEYWORDS=~alpha amd64 ia64 ~ppc ppc64 ~sparc x86 +KEYWORDS=amd64 x86 LICENSE=GPL-2 SLOT=0 SRC_URI=ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz _eclass_exported_funcs=src_configure:- src_test:- src_install:- -_md5_=567ee57c3e4279dc8f0e1cca217bd77b +_md5_=7c6b2b50ba2e91949f9996600304b619 diff --git a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4 b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4 index 2066cb0fbbeb..5e9709748d24 100644 --- a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4 +++ b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4 @@ -4,9 +4,9 @@ DESCRIPTION=Sequence analysis using profile hidden Markov models EAPI=6 HOMEPAGE=http://hmmer.org/ IUSE=altivec test threads -KEYWORDS=~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 +KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=2 SRC_URI=http://eddylab.org/software/hmmer/2.3.2/hmmer-2.3.2.tar.gz _eclass_exported_funcs=pkg_postinst:- src_configure:- src_install:- -_md5_=f50d1dc875f06155337fbf4e45cde7ae +_md5_=265d14031d24a7ce3769de795c83202f diff --git a/metadata/md5-cache/sci-biology/hmmer-3.0 b/metadata/md5-cache/sci-biology/hmmer-3.0 deleted file mode 100644 index e06bdf6a3ee0..000000000000 --- a/metadata/md5-cache/sci-biology/hmmer-3.0 +++ /dev/null @@ -1,14 +0,0 @@ -DEFINED_PHASES=configure install prepare -DEPEND=mpi? ( virtual/mpi ) gsl? ( >=sci-libs/gsl-1.12 ) -DESCRIPTION=Sequence analysis using profile hidden Markov models -EAPI=4 -HOMEPAGE=http://hmmer.janelia.org/ -IUSE=+cpu_flags_x86_sse mpi +threads gsl static-libs -KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos -LICENSE=GPL-3 -RDEPEND=mpi? ( virtual/mpi ) gsl? ( >=sci-libs/gsl-1.12 ) -SLOT=0 -SRC_URI=ftp://selab.janelia.org/pub/software/hmmer3/3.0/hmmer-3.0.tar.gz -_eclass_exported_funcs=src_prepare:- src_configure:- src_install:- -_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=2cae24445997ef6c055ce2a697c2e91a diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1 b/metadata/md5-cache/sci-biology/maq-0.7.1 deleted file mode 100644 index fd780ffe7f50..000000000000 --- a/metadata/md5-cache/sci-biology/maq-0.7.1 +++ /dev/null @@ -1,10 +0,0 @@ -DEFINED_PHASES=install -DESCRIPTION=Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences -EAPI=0 -HOMEPAGE=http://maq.sourceforge.net/ -KEYWORDS=amd64 x86 -LICENSE=GPL-3 -SLOT=0 -SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz -_eclass_exported_funcs=src_install:- -_md5_=fa63ca54437ca745a8c0a049fe8d8954 diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r1 b/metadata/md5-cache/sci-biology/maq-0.7.1-r1 deleted file mode 100644 index 308f2cfb7ec3..000000000000 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r1 +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=install prepare -DEPEND=sys-libs/zlib !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences -EAPI=4 -HOMEPAGE=http://maq.sourceforge.net/ -KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux -LICENSE=GPL-3 -RDEPEND=sys-libs/zlib -SLOT=0 -SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz -_eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=f5f3d4b18ceb0e7841a7e5ffd2939e6b diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 new file mode 100644 index 000000000000..05b8b3114c83 --- /dev/null +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 @@ -0,0 +1,13 @@ +DEFINED_PHASES=install prepare +DEPEND=sys-libs/zlib !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes +EAPI=6 +HOMEPAGE=http://maq.sourceforge.net/ +KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux +LICENSE=GPL-3 +RDEPEND=sys-libs/zlib +SLOT=0 +SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz +_eclass_exported_funcs=src_prepare:- src_install:- +_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 +_md5_=d3e0e2e43a577a0a8e0ad04241b90bc2 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r2 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r2 deleted file mode 100644 index 5bffd08038e3..000000000000 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r2 +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=compile configure install prepare test -DEPEND=media-libs/freeglut sys-libs/zlib !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler -EAPI=5 -HOMEPAGE=http://maq.sourceforge.net/ -KEYWORDS=amd64 x86 -LICENSE=GPL-3 -RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq -SLOT=0 -SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz -_eclass_exported_funcs=src_prepare:autotools-utils src_configure:autotools-utils src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils -_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=2eb00dc303b46d118cadda5d1bdf1289 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 new file mode 100644 index 000000000000..6408a0b971c2 --- /dev/null +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 @@ -0,0 +1,13 @@ +DEFINED_PHASES=prepare +DEPEND=media-libs/freeglut sys-libs/zlib !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler +EAPI=6 +HOMEPAGE=http://maq.sourceforge.net/ +KEYWORDS=~amd64 ~x86 +LICENSE=GPL-3 +RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq +SLOT=0 +SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz +_eclass_exported_funcs=src_prepare:- +_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 +_md5_=256ef3644c427c65d344620e8533c95c diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 index 7b02947a062c..7fa1e059dce0 100644 --- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 +++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 @@ -1,6 +1,6 @@ DEFINED_PHASES=compile install prepare setup DEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt ) -DESCRIPTION=Development toolkit and applications for computational biology, including NCBI BLAST +DESCRIPTION=Development toolkit and applications for computational biology, including BLAST EAPI=5 HOMEPAGE=http://www.ncbi.nlm.nih.gov/ IUSE=doc static-libs X @@ -11,4 +11,4 @@ SLOT=0 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz _eclass_exported_funcs=pkg_setup:- src_prepare:- src_compile:- src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 prefix 99dcca42e6528d8fe3c214bf5731aaf2 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=18c39254e961f1799e6ad5e5408ed52e +_md5_=07fb3890d02f03a28198e7dbc142511c diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.3.0 b/metadata/md5-cache/sci-biology/newick-utils-1.3.0 deleted file mode 100644 index 97c24ae3eab0..000000000000 --- a/metadata/md5-cache/sci-biology/newick-utils-1.3.0 +++ /dev/null @@ -1,11 +0,0 @@ -DEFINED_PHASES=install test -DESCRIPTION=Tools for processing phylogenetic trees (re-root, subtrees, trimming, pruning, condensing, drawing) -EAPI=2 -HOMEPAGE=http://cegg.unige.ch/newick_utils -KEYWORDS=amd64 x86 -LICENSE=BSD -RDEPEND=!dev-games/libnw -SLOT=0 -SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.3.0.tar.gz -_eclass_exported_funcs=src_test:- src_install:- -_md5_=835a17d5f1779bde721ca3331061bdbc diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.5.0 b/metadata/md5-cache/sci-biology/newick-utils-1.5.0 deleted file mode 100644 index 3142fd565f9c..000000000000 --- a/metadata/md5-cache/sci-biology/newick-utils-1.5.0 +++ /dev/null @@ -1,11 +0,0 @@ -DEFINED_PHASES=install test -DESCRIPTION=Tools for processing phylogenetic trees (re-root, subtrees, trimming, pruning, condensing, drawing) -EAPI=2 -HOMEPAGE=http://cegg.unige.ch/newick_utils -KEYWORDS=~amd64 ~x86 -LICENSE=BSD -RDEPEND=!dev-games/libnw -SLOT=0 -SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.5.0.tar.gz -_eclass_exported_funcs=src_test:- src_install:- -_md5_=0917f326462c3f79b510c4ec5f051454 diff --git a/metadata/md5-cache/sci-biology/prints-39.0 b/metadata/md5-cache/sci-biology/prints-39.0 index 584a2da6793f..8b365dfcaaf7 100644 --- a/metadata/md5-cache/sci-biology/prints-39.0 +++ b/metadata/md5-cache/sci-biology/prints-39.0 @@ -4,10 +4,10 @@ DESCRIPTION=A protein motif fingerprint database EAPI=0 HOMEPAGE=http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/ IUSE=emboss minimal -KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris LICENSE=public-domain RDEPEND=emboss? ( sci-biology/emboss ) SLOT=0 SRC_URI=mirror://gentoo/prints-39.0.tar.bz2 _eclass_exported_funcs=src_compile:- src_install:- -_md5_=92901e212ac7746e9ff9c941a1cdae10 +_md5_=95ddbee2ff12aff41f0113f8bc06a162 diff --git a/metadata/md5-cache/sci-biology/prosite-19.36 b/metadata/md5-cache/sci-biology/prosite-19.36 index ce30d7d2427d..7ad18e03b954 100644 --- a/metadata/md5-cache/sci-biology/prosite-19.36 +++ b/metadata/md5-cache/sci-biology/prosite-19.36 @@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database EAPI=0 HOMEPAGE=http://ca.expasy.org/prosite IUSE=emboss minimal -KEYWORDS=amd64 ppc x86 +KEYWORDS=amd64 x86 LICENSE=swiss-prot RDEPEND=emboss? ( sci-biology/emboss ) SLOT=0 SRC_URI=mirror://gentoo/prosite-19.36.tar.bz2 _eclass_exported_funcs=src_compile:- src_install:- -_md5_=add1e735422c0eb765c798ffa290416f +_md5_=8082c67792cbeee6c77862133f1eaaf4 diff --git a/metadata/md5-cache/sci-biology/prosite-20.36 b/metadata/md5-cache/sci-biology/prosite-20.36 index 6b5b127917d1..6564b076ed83 100644 --- a/metadata/md5-cache/sci-biology/prosite-20.36 +++ b/metadata/md5-cache/sci-biology/prosite-20.36 @@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database EAPI=0 HOMEPAGE=http://ca.expasy.org/prosite IUSE=emboss minimal -KEYWORDS=amd64 ~ppc x86 +KEYWORDS=amd64 x86 LICENSE=swiss-prot RDEPEND=emboss? ( sci-biology/emboss ) SLOT=0 SRC_URI=mirror://gentoo/prosite-20.36.tar.bz2 _eclass_exported_funcs=src_compile:- src_install:- -_md5_=219e62658f07a2f2ca280e4efbde8c9e +_md5_=9ecbe86035d5260e9de47c79d104b906 diff --git a/metadata/md5-cache/sci-biology/prosite-20.52 b/metadata/md5-cache/sci-biology/prosite-20.52 index ebfe77289fa8..7246d9292994 100644 --- a/metadata/md5-cache/sci-biology/prosite-20.52 +++ b/metadata/md5-cache/sci-biology/prosite-20.52 @@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database EAPI=0 HOMEPAGE=http://ca.expasy.org/prosite IUSE=emboss minimal -KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris +KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris LICENSE=swiss-prot RDEPEND=emboss? ( sci-biology/emboss ) SLOT=0 SRC_URI=mirror://gentoo/prosite-20.52.tar.bz2 _eclass_exported_funcs=src_compile:- src_install:- -_md5_=99cc1069ef5cf28badb48f55a0ca904a +_md5_=57a70df04c801e6fe09c7740954e03ff diff --git a/metadata/md5-cache/sci-biology/prosite-20.72 b/metadata/md5-cache/sci-biology/prosite-20.72 index c490259ab077..518fe2521694 100644 --- a/metadata/md5-cache/sci-biology/prosite-20.72 +++ b/metadata/md5-cache/sci-biology/prosite-20.72 @@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database EAPI=0 HOMEPAGE=http://ca.expasy.org/prosite IUSE=emboss minimal -KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris LICENSE=swiss-prot RDEPEND=emboss? ( sci-biology/emboss ) SLOT=0 SRC_URI=mirror://gentoo/prosite-20.72.tar.bz2 _eclass_exported_funcs=src_compile:- src_install:- -_md5_=6b7103738cf6b7c7db1f30a81ec09132 +_md5_=fe92816478738bce4341c9bcf36f43be diff --git a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r1 b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r2 index b597b842f6ee..e8b8a5d1fb32 100644 --- a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r1 +++ b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r2 @@ -1,13 +1,13 @@ DEFINED_PHASES=compile install prepare DEPEND=dev-lang/perl sci-biology/hmmer DESCRIPTION=Prototype ncRNA genefinder -EAPI=4 +EAPI=6 HOMEPAGE=http://selab.janelia.org/software.html -KEYWORDS=amd64 ~ppc x86 +KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 RDEPEND=dev-lang/perl sci-biology/hmmer SLOT=0 SRC_URI=mirror://gentoo/qrna-2.0.3c.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=a604c43b2c62327815727613b2748c6f +_eclasses_=multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 +_md5_=2d6f354a4083037008b24f7323b920a6 diff --git a/metadata/md5-cache/sci-biology/rebase-1612 b/metadata/md5-cache/sci-biology/rebase-1612 index 9bf604cd9c7e..2e31d5b660c4 100644 --- a/metadata/md5-cache/sci-biology/rebase-1612 +++ b/metadata/md5-cache/sci-biology/rebase-1612 @@ -4,11 +4,11 @@ DESCRIPTION=A restriction enzyme database EAPI=6 HOMEPAGE=http://rebase.neb.com IUSE=emboss minimal -KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris LICENSE=public-domain RDEPEND=emboss? ( >=sci-biology/emboss-5.0.0 ) RESTRICT=binchecks strip SLOT=0 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1612.tar.xz _eclass_exported_funcs=src_compile:- src_install:- -_md5_=2fc133b660de01cb70f68c236f31e1f7 +_md5_=751dffb5b6fb5faf153aa8f8fec20fdb diff --git a/metadata/md5-cache/sci-biology/rebase-1701 b/metadata/md5-cache/sci-biology/rebase-1701 index a6e5227b505f..f57b14f325ca 100644 --- a/metadata/md5-cache/sci-biology/rebase-1701 +++ b/metadata/md5-cache/sci-biology/rebase-1701 @@ -4,11 +4,11 @@ DESCRIPTION=A restriction enzyme database EAPI=6 HOMEPAGE=http://rebase.neb.com IUSE=emboss minimal -KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris +KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris LICENSE=public-domain RDEPEND=emboss? ( >=sci-biology/emboss-5.0.0 ) RESTRICT=binchecks strip SLOT=0 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1701.tar.xz _eclass_exported_funcs=src_compile:- src_install:- -_md5_=5a8bc4dcd52e4331f0fe8025db92bc0a +_md5_=dde9bc2abd9c51b448f10e38da9a4917 diff --git a/metadata/md5-cache/sci-biology/seaview-4.3.5 b/metadata/md5-cache/sci-biology/seaview-4.3.5 index 8601474e289c..894dfb97571a 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.3.5 +++ b/metadata/md5-cache/sci-biology/seaview-4.3.5 @@ -4,11 +4,11 @@ DESCRIPTION=A graphical multiple sequence alignment editor EAPI=5 HOMEPAGE=http://pbil.univ-lyon1.fr/software/seaview.html IUSE=+xft -KEYWORDS=amd64 ppc x86 +KEYWORDS=amd64 x86 LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.5.tar.gz _eclass_exported_funcs=src_prepare:- src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=9d788d989511d355673d31e81a3f34e8 +_md5_=436865841ea6e60c1bfe4fd7726ef32a diff --git a/metadata/md5-cache/sci-biology/seaview-4.5.4 b/metadata/md5-cache/sci-biology/seaview-4.5.4 index db041e624fd5..5955b6017d4c 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.5.4 +++ b/metadata/md5-cache/sci-biology/seaview-4.5.4 @@ -4,11 +4,11 @@ DESCRIPTION=A graphical multiple sequence alignment editor EAPI=5 HOMEPAGE=http://pbil.univ-lyon1.fr/software/seaview.html IUSE=+xft -KEYWORDS=amd64 ppc x86 +KEYWORDS=amd64 x86 LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.5.4.tar.gz _eclass_exported_funcs=src_prepare:- src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=6226d6428885158b7d6d73e153e2ae2f +_md5_=436865841ea6e60c1bfe4fd7726ef32a diff --git a/metadata/md5-cache/sci-biology/transfac-3.2 b/metadata/md5-cache/sci-biology/transfac-3.2 index 442a4718d53f..694f8cdf4d2f 100644 --- a/metadata/md5-cache/sci-biology/transfac-3.2 +++ b/metadata/md5-cache/sci-biology/transfac-3.2 @@ -4,10 +4,10 @@ DESCRIPTION=A database of eucaryotic transcription factors EAPI=0 HOMEPAGE=http://www.gene-regulation.com/pub/databases.html IUSE=emboss minimal -KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris +KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris LICENSE=public-domain RDEPEND=emboss? ( sci-biology/emboss ) SLOT=3 SRC_URI=ftp://ftp.ebi.ac.uk/pub/databases/transfac/transfac32.tar.Z _eclass_exported_funcs=src_compile:- src_install:- -_md5_=39ef300168197d20ec49bae89abf1904 +_md5_=9f3a478574a503b4104d6fa3d4cd0a7c diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 index 55bb8702427a..08ec14ea4c2c 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 @@ -1,15 +1,15 @@ DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-lang/swig:0 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] +DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] DESCRIPTION=RNA secondary structure prediction and comparison EAPI=5 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/ IUSE=doc openmp python static-libs python_targets_python2_7 KEYWORDS=amd64 ppc x86 LICENSE=vienna-rna -RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-lang/swig:0 ) dev-lang/perl:=[-build(-)] +RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-lang/perl:=[-build(-)] REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:- _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be xdg-utils e2b2bd56125ce8cf59ce30c642b59d48 -_md5_=6d978aca9747776d0b4fb8d647081e1e +_md5_=04ba30f9eea89eb39f613ebf22fa3936 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 index b39393645841..8c9c5d1590fe 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 @@ -1,15 +1,15 @@ DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-lang/swig:0 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] +DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] DESCRIPTION=RNA secondary structure prediction and comparison EAPI=5 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/ IUSE=doc openmp python static-libs python_targets_python2_7 KEYWORDS=~amd64 ~ppc ~x86 LICENSE=vienna-rna -RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-lang/swig:0 ) dev-lang/perl:=[-build(-)] +RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-lang/perl:=[-build(-)] REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:- _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be xdg-utils e2b2bd56125ce8cf59ce30c642b59d48 -_md5_=f3373f37e05509bac04eae39f236e5cc +_md5_=3954a3e2e9c73028e62da2ba8a8cb0fd diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 index f3d42a10f4a7..78a1eb45dae9 100644 --- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 +++ b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 @@ -1,6 +1,6 @@ DEFINED_PHASES=compile configure install prepare setup DEPEND=x11-libs/libXt !x11-terms/terminator =dev-lang/python-2* -DESCRIPTION=A de novo whole-genome shotgun DNA sequence assembler, also known as the Celera Assembler and CABOG +DESCRIPTION=The Celera de novo whole-genome shotgun DNA sequence assembler, aka CABOG EAPI=4 HOMEPAGE=https://sourceforge.net/projects/wgs-assembler/ IUSE=static-libs @@ -11,4 +11,4 @@ SLOT=0 SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2 _eclass_exported_funcs=pkg_setup:- src_prepare:- src_configure:- src_compile:- src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 python efc1c55fc44c5b7272fc2ffba73c3e6f toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=c4d83da689431ab93d575e326ee07e1d +_md5_=39d33cb0fac64468696f9d10923c6e41 diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha index 03a52ba99ced..c9a392a282ba 100644 --- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha +++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha @@ -4,11 +4,11 @@ DESCRIPTION=Intelligent algorithms for DNA searches EAPI=5 HOMEPAGE=http://www.ebi.ac.uk/Wise2/ IUSE=doc static-libs -KEYWORDS=~alpha amd64 ia64 ~sparc x86 +KEYWORDS=~amd64 ~x86 LICENSE=BSD RDEPEND=~sci-biology/hmmer-2.3.2 SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=8eee710efb6992b2ba447f3f5b941f08 +_md5_=d239de1cf76014a4fc5dece44aacda58 |