diff options
Diffstat (limited to 'sci-biology/dialign2')
| -rw-r--r-- | sci-biology/dialign2/dialign2-2.2.1.ebuild | 29 | ||||
| -rw-r--r-- | sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch | 46 |
2 files changed, 62 insertions, 13 deletions
diff --git a/sci-biology/dialign2/dialign2-2.2.1.ebuild b/sci-biology/dialign2/dialign2-2.2.1.ebuild index 13ce733d8a79..db310e3fe8d3 100644 --- a/sci-biology/dialign2/dialign2-2.2.1.ebuild +++ b/sci-biology/dialign2/dialign2-2.2.1.ebuild @@ -1,34 +1,37 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=6 -inherit toolchain-funcs +inherit flag-o-matic toolchain-funcs DESCRIPTION="Multiple sequence alignment" HOMEPAGE="http://bibiserv.techfak.uni-bielefeld.de/dialign" -SRC_URI="http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz" +SRC_URI="http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-${PV}-src.tar.gz" -SLOT="0" LICENSE="LGPL-2.1" +SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" -S="${WORKDIR}"/dialign_package +S=${WORKDIR}/dialign_package +PATCHES=( "${FILESDIR}"/${PN}-2.2.1-fix-build-system.patch ) + +src_configure() { + tc-export CC + append-cppflags -I. -DCONS +} src_compile() { - emake -C src \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS} -I. -DCONS -c" + emake -C src } src_install() { dobin src/${PN}-2 insinto /usr/share/${PN} - doins dialign2_dir/* + doins -r dialign2_dir/. - cat >> "${T}"/80${PN} <<- EOF - DIALIGN2_DIR="${EPREFIX}/usr/share/${PN}" + cat >> "${T}"/80${PN} <<- EOF || die + DIALIGN2_DIR="${EPREFIX}/usr/share/${PN}" EOF doenvd "${T}"/80${PN} } diff --git a/sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch b/sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch new file mode 100644 index 000000000000..45365c56e3a4 --- /dev/null +++ b/sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch @@ -0,0 +1,46 @@ +--- a/src/makefile ++++ b/src/makefile +@@ -10,8 +10,6 @@ + ############################### + + +-CC = gcc +-CFLAGS = -c -O -I$ -DCONS + #CFLAGS = -g -c -I$ -DCONS + LIBS = -lm + # +@@ -23,33 +21,4 @@ + + # + dialign2-2: $(OBJS) +- $(CC) $(OBJS) $(LIBS) -o dialign2-2 +-# $(CC) -g $(OBJS) $(LIBS) -o dialign2-2_db +-# +-# +-# Subroutines +-# +- +-dialign.o: dialign.c +- $(CC) $(CFLAGS) dialign.c +-functions.o: functions.c +- $(CC) $(CFLAGS) functions.c +-input.o: input.c +- $(CC) $(CFLAGS) input.c +-frag_chain.o: frag_chain.c +- $(CC) $(CFLAGS) frag_chain.c +-para.o: para.c +- $(CC) $(CFLAGS) para.c +-output.o: output.c +- $(CC) $(CFLAGS) output.c +-wgt.o: wgt.c +- $(CC) $(CFLAGS) wgt.c +-regex.o: regex.c +- $(CC) $(CFLAGS) regex.c +-anchor.o: anchor.c +- $(CC) $(CFLAGS) anchor.c +- +-# +- +- +- ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^ $(LIBS) |