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* sci-chemistry/gromacs: Fix misspellingAlexey Shvetsov2022-02-161-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/ParmEd: Initial importAlexey Shvetsov2022-02-163-0/+35
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: CleanupAlexey Shvetsov2022-02-162-354/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: Fix gromacs citatonAlexey Shvetsov2022-02-1612-37/+25
| | | | | | Closes: https://bugs.gentoo.org/755254 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: Add missing inheritAlexey Shvetsov2022-02-162-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: Drop unused eclassAlexey Shvetsov2022-02-166-9/+9
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: Drop non-exising blockerAlexey Shvetsov2022-02-163-5/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: Allow to build with clangAlexey Shvetsov2022-02-162-1/+19
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: Stabilize 2021.3-r1 x86, #814101Jakov Smolić2022-02-141-2/+2
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-chemistry/povscript+: treecleanJakov Smolić2022-02-124-83/+0
| | | | | | | Closes: https://bugs.gentoo.org/515818 Closes: https://bugs.gentoo.org/586260 Closes: https://bugs.gentoo.org/828703 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-chemistry/gromacs: version bump for 2020.7Alexey Shvetsov2022-02-102-0/+355
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/molscript: treecleanJakov Smolić2022-02-108-221/+0
| | | | | Closes: https://bugs.gentoo.org/828708 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-chemistry/gromacs: remove unused patchMichael Mair-Keimberger2022-02-101-53/+0
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/24138 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-chemistry/gromacs: Cleanup 2021 versionsAlexey Shvetsov2022-02-085-727/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: there no mdrun_only builds with gromacs 2022Alexey Shvetsov2022-02-083-94/+10
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/mpqc: fix build system and MPIDavid Seifert2022-01-292-24/+61
| | | | | | Closes: https://bugs.gentoo.org/710822 Closes: https://bugs.gentoo.org/801682 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-chemistry/gromacs: rc1 addedAlexey Shvetsov2022-01-272-5/+5
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: Version bumpAlexey Shvetsov2022-01-272-0/+359
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/votca: version bumpChristoph Junghans2022-01-152-0/+71
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-chemistry/MDAnalysis: add py 3.10Alexey Shvetsov2022-01-131-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/GromacsWrapper: Drop eutils.eclassAlexey Shvetsov2022-01-131-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/GromacsWrapper: Add py 3.10Alexey Shvetsov2022-01-131-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/autodock_vina: remove useless <use> descriptionDavid Seifert2022-01-081-7/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-chemistry/mdtraj: add missing test depAndrew Ammerlaan2021-12-291-0/+1
| | | | | | Closes: https://bugs.gentoo.org/830174 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/mdtraj: add version 1.9.7, enable py3.10, fix testsAndrew Ammerlaan2021-12-282-0/+42
| | | | | | Bug: https://bugs.gentoo.org/809770 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/MDAnalysis: add version 2.0.0, enable py3.10Andrew Ammerlaan2021-12-282-0/+38
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/votca: initial importChristoph Junghans2021-12-164-0/+159
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-chemistry/gnome-chemistry-utils: Drop oldPacho Ramos2021-12-161-74/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-chemistry/gnome-chemistry-utils: Fix compat with openbabelPacho Ramos2021-12-161-0/+76
| | | | | | | Bump eapi too Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-chemistry/openbabel: bump EAPI=8, add python310Andrew Ammerlaan2021-12-152-4/+4
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/openbabel: Bump openbabel-3.1.1_p20210225Peter Levine2021-12-152-0/+273
| | | | | | | | | | | | | | Closes: https://bugs.gentoo.org/664124 Closes: https://bugs.gentoo.org/716208 Closes: https://bugs.gentoo.org/722860 Closes: https://bugs.gentoo.org/723434 Closes: https://bugs.gentoo.org/766003 Closes: https://bugs.gentoo.org/770493 Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Peter Levine <plevine457@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/16182 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/openbabel: Add openbabel-9999Peter Levine2021-12-154-0/+381
| | | | | | | | | Add an up-to-date live ebuild with a templated versioning scheme, and match the bindings to USE flags. Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Peter Levine <plevine457@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/probe: de-stabilize for ~ppc, bug #823768Georgy Yakovlev2021-11-181-1/+1
| | | | | Bug: https://bugs.gentoo.org/823768 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-chemistry/mopac7: de-stabilize for ~ppc, bug #823768Georgy Yakovlev2021-11-181-1/+1
| | | | | Bug: https://bugs.gentoo.org/823768 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-chemistry/molscript: de-stabilize for ~ppc, bug #823768Georgy Yakovlev2021-11-181-1/+1
| | | | | Bug: https://bugs.gentoo.org/823768 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-chemistry/molmol: de-stabilize for ~ppc, bug #823768Georgy Yakovlev2021-11-181-2/+2
| | | | | Bug: https://bugs.gentoo.org/823768 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-chemistry/moldy: de-stabilize for ~ppc, bug #823768Georgy Yakovlev2021-11-181-2/+2
| | | | | Bug: https://bugs.gentoo.org/823768 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-chemistry/tm-align: de-stabilize for ~ppc, bug #823768Georgy Yakovlev2021-11-181-2/+2
| | | | | Bug: https://bugs.gentoo.org/823768 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-chemistry/dssp: Stabilize 3.0.11 amd64, #823826Jakov Smolić2021-11-161-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-chemistry/dssp: x86 stable wrt bug #823826Agostino Sarubbo2021-11-161-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-chemistry/dssp: don't run useless (for downstream) cppcheck testSam James2021-11-161-1/+2
| | | | | | | | It's not useful for us to determine if the package is working correctly so skip it. Closes: https://bugs.gentoo.org/823894 Signed-off-by: Sam James <sam@gentoo.org>
* sci-chemistry/chemex: Update tests handlingPacho Ramos2021-11-121-1/+1
| | | | | | | Closes: https://bugs.gentoo.org/815079 Thanks-to: Agostino Sarubbo Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-chemistry/chemex: Drop oldPacho Ramos2021-11-113-91/+0
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-chemistry/chemex: Version bumpPacho Ramos2021-11-112-0/+47
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-chemistry/vmd: Bump to alpha55Pacho Ramos2021-11-112-0/+270
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-chemistry/gromacs: version bump to 2021.4Alexey Shvetsov2021-11-092-0/+359
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/gromacs: fix v2019 build on newer glibcChristoph Junghans2021-11-072-0/+293
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-chemistry/openbabel: Drop 2.4.1-r1Andreas Sturmlechner2021-11-073-130/+0
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-chemistry/dssp: Drop oldPacho Ramos2021-11-063-79/+0
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-chemistry/dssp: gromacs-2022 will support dssp-4Pacho Ramos2021-11-061-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>