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* sci-libs/libqalculate: conditionally build testsSam James2021-12-041-2/+4
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: add 3.22.0Sam James2021-12-043-0/+80
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: [QA] Revert "fix build with new deps versions"Sam James2021-12-039-3303/+0
| | | | | | | | | | | | | | | | | | | | | | This reverts commit 4893345530421b0d6168b5278d57d69fc08f7fdf. Rationale: - Several patches far beyond the size limit; - Change was NAKed on IRC; - A PR is in progress for a newer version which would require fewer patches; - Invasive patches which aren't strictly needed. They add compatibility for newer versions of some software, but most of this comes with VTK 9.1 (for which, as mentioned, there's a PR well in progress by the maintainer) and we can apply a smaller set of patches to that version if required. - Missing sign-off / provenance for some patches; Bug: https://bugs.gentoo.org/827310 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: fix build with new deps versionsVadim Misbakh-Soloviov2021-12-049-0/+3303
| | | | | | | | | | | | | | | Mostly backported upstream patches (from 9.1.0 and post-9.1). Also, some patches (like CUDA-11.5) was provided by Vyacheclav Perestoronin <perestoronin@gmail.com> and slightly adapted by me. Actually, there is already PR for 9.1.0, which have most of this compatibility issues fixed, but I bump 9.0.3 to work with them in case if there is some revdeps still not compatible with 9.1 API/ABI. Bug: https://bugs.gentoo.org/827310 Package-Manager: Portage-3.0.28, Repoman-3.0.1 Signed-off-by: Vadim Misbakh-Soloviov <mva@gentoo.org>
* sci-libs/gsl: fix subslot for 2.7.1Sam James2021-12-021-1/+2
| | | | | | | I thought I'd done this but apparently not. Closes: https://bugs.gentoo.org/828023 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gmsh: add GCC 11 patchSam James2021-12-022-0/+84
| | | | | | | | Seems to build fine without this for me but it's reasonable, upstream, and seems to help others. Closes: https://bugs.gentoo.org/800536 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Drop 3.8.0 and 3.9.0-r1Andreas Sturmlechner2021-12-023-192/+0
| | | | | | Closes: https://bugs.gentoo.org/733580 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.0 x86, #733580Arthur Zamarin2021-12-021-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: amd64 stable wrt bug #733580Agostino Sarubbo2021-12-021-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/blis: bump version to 0.8.1Zhang Zongyu2021-12-023-0/+122
| | | | | | | | Closes: https://github.com/gentoo/gentoo/pull/23106 Closes: https://bugs.gentoo.org/764098 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Zhang Zongyu <zongyu@novazy.net> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/spqr: pin to older TBBSam James2021-12-021-1/+1
| | | | | Bug: https://bugs.gentoo.org/825514 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: pin to older TBBSam James2021-12-022-2/+2
| | | | | Bug: https://bugs.gentoo.org/827310 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.0 hppa, #733580Sam James2021-12-021-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: add 2.7.1Sam James2021-12-012-0/+64
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.0 ppc64, #733580Arthur Zamarin2021-12-011-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.0 ppc, #733580Arthur Zamarin2021-12-011-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.0 arm64, #733580Arthur Zamarin2021-12-011-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.0 arm, #733580Arthur Zamarin2021-12-011-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.0 sparc, #733580Arthur Zamarin2021-12-011-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/sundials: keyword 5.8.0 for ~riscvAlex Fan2021-12-011-1/+1
| | | | | Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/klu: keyword 1.3.9-r2 for ~riscvAlex Fan2021-12-011-1/+1
| | | | | Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/btf: keyword 1.2.6 for ~riscvAlex Fan2021-12-011-1/+1
| | | | | Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/hypre: keyword 2.21.0 for ~riscvAlex Fan2021-12-011-1/+1
| | | | | Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/superlu_mt: keyword 3.1-r1 for ~riscvAlex Fan2021-12-011-1/+1
| | | | | Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/lapack: Drop 3.8.0-r1Andreas Sturmlechner2021-11-301-88/+0
| | | | | | Bug: https://bugs.gentoo.org/733580 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/fcl: Drop 0.5.0-r1Andreas Sturmlechner2021-11-302-41/+0
| | | | | | Bug: https://bugs.gentoo.org/770589 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/hipFFT: ROCm FFT marshalling libraryYiyangWu2021-11-306-0/+185
| | | | | | | | | | | hipFFT is the front end of rocFFT, and is dependency of ROCm supported math/DL frameworks like pytorch. Bug: https://bugs.gentoo.org/705712 Closes: https://github.com/gentoo/gentoo/pull/22804 Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/indilib: Drop 1.9.1-r1Andreas Sturmlechner2021-11-293-88/+0
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.2 ppc64, #818283Arthur Zamarin2021-11-291-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.2 ppc, #818283Arthur Zamarin2021-11-291-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/mkl: rpm needs xz-utils[extra-filters]Sam James2021-11-291-1/+3
| | | | | Closes: https://bugs.gentoo.org/801460 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libbufr: treecleanJakov Smolić2021-11-284-287/+0
| | | | | | | Closes: https://bugs.gentoo.org/819111 Closes: https://bugs.gentoo.org/715688 Closes: https://bugs.gentoo.org/723466 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/superlu_mt: apply Alex's PREDEFS patchMarek Szuba2021-11-281-0/+105
| | | | | | | | New revision because it changes runtime behaviour for USE=int64 users. Closes: https://bugs.gentoo.org/817680 Closes: https://github.com/gentoo/gentoo/pull/23063 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/superlu_mt: fix int64 not taking effectAlex Fan2021-11-282-2/+23
| | | | | | | | | | | | | upstream uses unconventional variables names. int64 adds _LONG_INT to PREDEFS. PREDEFS seems to be a synonym of CPPFLAGS and used sparingly to be appended to CFLAGS. It should be passed to $(CC) explicitly for int64 to take effect. EXAMLE/Makefile should include ../make.in, which is the same in upstream. Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/coinor-csdp: add 6.2.0, drop 6.1.1-r1Marek Szuba2021-11-263-35/+112
| | | | | | | | | | EAPI 8 + quite a few bug fixes, both ones with open Bugzilla tickets and some that were not reported. Closes: https://bugs.gentoo.org/710520 Closes: https://bugs.gentoo.org/731878 Closes: https://bugs.gentoo.org/792897 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/indilib: backport test skip to 1.9.2Sam James2021-11-261-0/+12
| | | | | Bug: https://bugs.gentoo.org/763126 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libxc: add 5.1.7Sam James2021-11-262-0/+42
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/indilib: skip long-suffering base64 test on ppc*, sparcSam James2021-11-251-0/+12
| | | | | | | | | | | No point in holding back stabilisations for months until we finally get fed up and stable it anyway. We know this test fails, it's been reported upstream, and it's not a regression, so let's skip it so we have an accurate idea of what the baseline is on these arches. Bug: https://bugs.gentoo.org/763126 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-fortran: add 4.5.3Sam James2021-11-252-0/+49
| | | | | Closes: https://bugs.gentoo.org/771612 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: add 4.8.1Sam James2021-11-253-0/+99
| | | | | | | Doesn't seem to hardcode libdl path anymore which avoids glibc-2.34 issues. Closes: https://bugs.gentoo.org/827188 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: disable strict aliasing for nowSam James2021-11-251-1/+6
| | | | | | | Causes test failures. Bug: https://bugs.gentoo.org/827042 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.2 x86, #818283Sam James2021-11-251-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/openblas: remove unused patchesMichael Mair-Keimberger2021-11-233-194/+0
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/22975 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/lmfit: remove unused patchMichael Mair-Keimberger2021-11-231-85/+0
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/22971 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/cartopy: Drop oldThomas Beierlein2021-11-222-68/+0
| | | | | | | See also bug# 822819 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/symengine: keyword 0.7.0 for ~riscvAlex Fan2021-11-221-1/+1
| | | | | Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/cddlib: keyword 094m-r1 for ~riscvAlex Fan2021-11-221-1/+1
| | | | | Signed-off-by: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* */*: reassign aisha's packagesJoonas Niilola2021-11-213-12/+0
| | | | | Bug: https://bugs.gentoo.org/719632 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/scotch: Stabilize 6.1.0-r1 arm, #818649Arthur Zamarin2021-11-211-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/pastix: Keyword 6.0.3 arm64, #730636Arthur Zamarin2021-11-191-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>