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* sci-libs/ssm: RemoveMatt Turner2019-08-093-40/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/monomer-db: RemoveMatt Turner2019-08-093-37/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/mmdb: RemoveMatt Turner2019-08-097-112/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/libccp4: RemoveMatt Turner2019-08-093-38/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/gpp4: RemoveMatt Turner2019-08-093-38/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/coot-data: RemoveMatt Turner2019-08-093-40/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/clipper: RemoveMatt Turner2019-08-093-73/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/cctbx: RemoveMatt Turner2019-08-0911-1335/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/dcmtk: remove old 3.6.4Joonas Niilola2019-08-091-86/+0
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/dcmtk: FHS-compliant config file pathsHorea Christian2019-08-091-0/+87
| | | | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/12656 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/cantera: Fix missing RDEPEND="${PYTHON_DEPS}" warningband-a-prend2019-08-091-1/+1
| | | | | | | | Closes: https://bugs.gentoo.org/691404 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Closes: https://github.com/gentoo/gentoo/pull/12650 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/dcmtk: version bump 3.6.4Horea Christian2019-08-082-0/+87
| | | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/12024 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/tensorflow-estimator: bump to 1.14.0Jason Zaman2019-08-072-1/+1
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow-estimator: update copyright lineJason Zaman2019-08-072-2/+2
| | | | | | Closes: https://bugs.gentoo.org/691646 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow: update copyright lineJason Zaman2019-08-072-2/+2
| | | | | | Bug: https://bugs.gentoo.org/691646 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/trilinos: fix automagic dependencyMatthias Maier2019-08-061-0/+1
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix metadata.xmlMatthias Maier2019-08-061-2/+1
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: [QA] fix package atom in metadata.xmlMatthias Maier2019-08-051-1/+1
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: ebuild maintenanceMatthias Maier2019-08-053-12/+60
| | | | | | | | | | | * remove local description in metadata * avoid warning about unused variable * do not export LDFLAGS in pc files Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: ebuild maintenanceMatthias Maier2019-08-052-7/+5
| | | | | | | | | | | | | * fix rm/mv paths to clean up installation * remove obsolete configuration options * skip setting an RPATH * fix metadata Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix typoMatthias Maier2019-08-051-1/+1
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: package migration from ::science overlayMatthias Maier2019-08-054-0/+337
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: package migration from ::science overlayMatthias Maier2019-08-053-0/+260
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: package migration from ::science overlayMatthias Maier2019-08-053-0/+95
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/med: package migration from ::science overlayMatthias Maier2019-08-053-0/+61
| | | | | | | | | | * version bump * new upsteam website and repo * EAPI=7 * fixup installation Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/openblas: use pkg_setup to do the build env and checks.Benda Xu2019-08-041-26/+21
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/12576 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: Allow custom CFLAGS and add fortran checks.Benda Xu2019-08-042-9/+23
| | | | | | | | | Drop unused USE flags. Suggested-By: Hasan ÇALIŞIR <hasan.calisir@psauxit.com> Closes: https://github.com/gentoo/gentoo/pull/12576 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/scikits_timeseries: Works with py3.7Alexey Shvetsov2019-08-031-0/+47
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_optimization: Works with py3.7Alexey Shvetsov2019-08-031-0/+31
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_learn: Works with py3.7Alexey Shvetsov2019-08-031-0/+106
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_image: Works with py3.7Alexey Shvetsov2019-08-031-0/+57
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits: Works with py3.7Alexey Shvetsov2019-08-031-0/+34
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/tensorflow-1.14.0-r1: Fix build issuesJason Zaman2019-08-035-6/+146
| | | | | | | | | | | | | | - Header paths were mangled - Jsoncpp-1.9 build error - Newer GRPC needed a bumped google-cloud-cpp dep - Build failed with python2 if future was not installed - Add tensorflow_cc pkgconfig file Closes: https://bugs.gentoo.org/688594 Closes: https://bugs.gentoo.org/689282 Closes: https://bugs.gentoo.org/690212 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/{blis,mkl-rt}: Add Gentoo Science Project as maintainer.Benda Xu2019-08-012-0/+8
| | | | | | Closes: https://bugs.gentoo.org/691128 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libcerf: Drop 1.3 and 1.4Andreas Sturmlechner2019-07-313-44/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libcerf: x86 stable wrt bug #685690Agostino Sarubbo2019-07-311-1/+1
| | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/cantera: remove 2.4.0-r0 as request by proxy-maintainerMatthias Maier2019-07-302-157/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: remove dangling whitespace in metadata.xmlMatthias Maier2019-07-301-1/+1
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: drop oldMatthias Maier2019-07-307-716/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: fix LICENSE installation patchesband-a-prend2019-07-302-2/+12
| | | | | | | | | Sundials 4.x add NOTICE files besides LICENSE files and current fix-licence-patches contain only fix for installation path of NOTICE files and don't fix payhs for LICENSE. Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/shapelib: arm64 stableAaron Bauman2019-07-291-2/+2
| | | | | | Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64"
* sci-libs/libcerf: arm stable wrt bug #685690Mikle Kolyada2019-07-291-1/+1
| | | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/lmfit: arm stable wrt bug #687240Mikle Kolyada2019-07-281-1/+1
| | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.16 RepoMan-Options: --include-arches="arm" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/openblas-0.3.6: add index-64bit support.Mo Zhou2019-07-242-3/+16
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/12475 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: remove 0.3.5 version.Mo Zhou2019-07-242-106/+0
| | | | | Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libgeotiff: Drop 1.4.0Andreas Sturmlechner2019-07-232-74/+0
| | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11
* sci-libs/libgeotiff: arm64 stable (bug #688806)Aaron Bauman2019-07-231-1/+1
| | | | | | Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64"
* sci-libs/cantera: 2.4.0-r1. Switch to EAPI 7band-a-prend2019-07-191-4/+4
| | | | | Closes: https://github.com/gentoo/gentoo/pull/12303 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Update/merge cantera_* patchesband-a-prend2019-07-192-6/+32
| | | | | | | | | Update "libdirname" patch with upstream [1] and merge it with "env" patch. [1] https://github.com/Cantera/cantera/pull/661 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Fix 'fatal' warningband-a-prend2019-07-191-1/+14
| | | | | | | | | | | | | | The SConstruct script contains block that tries to evaluate 'git rev-parse --short HEAD` comand and returns the "fatal: not a git repository (or any parent up to mount point /var/tmp)" warning from git command itself if git is installed in system. It occurs because the release package archive doesn't contain ".git" directory. This behaviour doesn't affect emerge process but can confuse in the case of other issues. Closes: https://bugs.gentoo.org/689998 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>