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* sci-libs/xdrfile: Stabilize 1.1.4 amd64, #762436Sam James2020-12-291-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/superlu: Stabilize 5.2.2 amd64, #762127Sam James2020-12-291-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/clblas: Remove old 2.10David Seifert2020-12-298-250/+0
| | | | | | | | Closes: https://bugs.gentoo.org/608086 Closes: https://bugs.gentoo.org/741386 Closes: https://bugs.gentoo.org/737410 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/clblas: Version bump to 2.12David Seifert2020-12-299-0/+218
| | | | | | | | Bug: https://bugs.gentoo.org/608086 Bug: https://bugs.gentoo.org/741386 Bug: https://bugs.gentoo.org/737410 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/rtree: updated PYTHON_COMPATHorea Christian2020-12-291-1/+1
| | | | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/18776 Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org>
* sci-libs/openblas: Stabilize 0.3.12-r1 amd64, #761861Sam James2020-12-291-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: conditionally build testsSam James2020-12-291-7/+8
| | | | | | | Actually use the patch. Package-Manager: Portage-3.0.12-prefix, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libgeodecomp: Fix build with OpenCV enabledKurt Kanzenbach2020-12-292-1/+190
| | | | | | | | Closes: https://bugs.gentoo.org/762196 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Closes: https://github.com/gentoo/gentoo/pull/18850 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: [QA] Fix subslotDavid Seifert2020-12-281-15/+14
| | | | | | | | * Add missing || die too Closes: https://bugs.gentoo.org/689194 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/netcdf: Bump to 4.7.4Jakov Smolic2020-12-282-0/+66
| | | | | | | | Closes: https://github.com/gentoo/gentoo/pull/18739 Closes: https://bugs.gentoo.org/682340 Closes: https://bugs.gentoo.org/711460 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libqalculate: Cleanup obsolete versionsJakov Smolic2020-12-283-127/+0
| | | | | Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libqalculate: Bump to 3.15.0Jakov Smolic2020-12-282-0/+67
| | | | | | | | | Bug: https://bugs.gentoo.org/717622 Closes: https://bugs.gentoo.org/754366 Closes: https://bugs.gentoo.org/689194 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libccd: Cleanup oldJakov Smolic2020-12-283-61/+0
| | | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.1 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libccd: Sync live ebuild, fix incorrect EGIT_REPO_URIJakov Smolic2020-12-282-11/+4
| | | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.1 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libccd: Disable static libsJakov Smolic2020-12-281-10/+4
| | | | | | | Closes: https://bugs.gentoo.org/725422 Package-Manager: Portage-3.0.9, Repoman-3.0.1 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/med: metadata QA FixJonas Stein2020-12-281-1/+1
| | | | | | | Correct tag. Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Jonas Stein <jstein@gentoo.org>
* sci-libs/tensorflow: Remove old 2.3.1-r1David Seifert2020-12-273-421/+1
| | | | | | | * Blocks cudnn cleanup Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/cgnslib: fix cmake unused variable warningsBernd Waibel2020-12-271-4/+18
| | | | | | | | | | - fix warnings about unused variables from cmake - restrict test when USE=fortran, the tests don't build Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/18838 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cgnslib: bump to EAPI 7Bernd Waibel2020-12-271-8/+11
| | | | | | | | | Switch to cmake.eclass Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/18749 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cgnslib: fix doc installationBernd Waibel2020-12-271-5/+5
| | | | | | | | | Also fixes a typo with CMAKE_USE_SHARED variable Closes: https://bugs.gentoo.org/760342 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/openblas: version bump 0.3.13Aisha Tammy2020-12-272-0/+199
| | | | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Aisha Tammy <gentoo@aisha.cc> Closes: https://github.com/gentoo/gentoo/pull/18769 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/arpack: Sync live ebuildJakov Smolic2020-12-271-0/+3
| | | | | Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/arpack: Bump to 3.8.0Jakov Smolic2020-12-272-0/+60
| | | | | | | Closes: https://bugs.gentoo.org/761292 Closes: https://bugs.gentoo.org/740222 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: dev-libs/pegtl as dependencyAlessandro Barbieri2020-12-271-0/+1
| | | | | | | | | | needed by USE="all-modules" Closes: https://bugs.gentoo.org/754687 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/18228 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Revert "dev-libs/pegtl as dependency"Andreas Sturmlechner2020-12-271-1/+0
| | | | | | | | | | This reverts commit 694ea56635c8bf70407885cca15095fa6694d0fe. IUSE=all-modules can be considered broken anyway, so there is time for ~arm keywording dev-libs/pegtl. Bug: https://bugs.gentoo.org/754687 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: dev-libs/pegtl as dependencyAlessandro Barbieri2020-12-271-0/+1
| | | | | | | | | | needed by USE="all-modules" Closes: https://bugs.gentoo.org/754687 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/18228 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/tensorflow: drop 2.4-rcJason Zaman2020-12-253-816/+0
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow: bump 2.4.0Jason Zaman2020-12-252-0/+408
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow-estimator: bump 2.4.0Jason Zaman2020-12-252-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* */*: Update copyright line for files touched in 2019 and 2020.Ulrich Müller2020-12-231-1/+1
| | | | Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-libs/dcmtk: Keyword 3.6.5 arm64, #758152Sam James2020-12-211-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/trilinos: ebuild maintenanceMatthias Maier2020-12-201-1/+0
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: version bump to 13.0.1Matthias Maier2020-12-202-0/+221
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: drop oldMatthias Maier2020-12-203-432/+0
| | | | | | | | | | Closing related obsolete bugs. Closes: https://bugs.gentoo.org/696836 Closes: https://bugs.gentoo.org/698520 Closes: https://bugs.gentoo.org/707424 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: drop useless IUSE=luaMarek Szuba2020-12-201-2/+1
| | | | | | | | | | | | No mention of "Lua" anywhere in the source tarball, builds exactly the same way regardless of the value of this USE flag as well as regardless of whether or not Lua is present on the build system (unsurprising given the above), and according to http://www.geuz.org/pipermail/gmsh/2011/006218.html gmsh Lua bindings got deprecated by Python ones almost a decade ago. Bug: https://bugs.gentoo.org/752837 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/p4est: migrate to lua-single.eclassMarek Szuba2020-12-202-6/+129
| | | | | | | | | | | | | | Both the latest release and the live ebuild. Doesn't do any Lua detection by itself, relies on libsc configuration instead. Therefore, the same compatibility as respective libsc versions. Status: - 2.2-r100 builds, tests and installs fine - 9999 untested due to build failures in sci-libs/libsc-9999 Closes: https://bugs.gentoo.org/752846 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/libsc: migrate to lua-single.eclassMarek Szuba2020-12-204-8/+225
| | | | | | | | | | | | | | | | Both the latest release and the live ebuild. Compatibility as per upstream build scripts. Uses a weird home-grown way of detecting Lua which makes implicit assumptions about paths used by Lua headers, I think I've managed to figure it out though. Status: - 2.2-r100 builds and installs fine but has one test (dmatrix) failing with a non-zero exit code, which test however has got nothing to do with Lua; - 9999 fails to build on an unrelated matter (upstream version-processing macros do not like "9999" appearing as version number). Closes: https://bugs.gentoo.org/752840 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/libsc: limit unmigrated ebuilds to dev-lang/lua:0Marek Szuba2020-12-202-4/+4
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/cartopy: Add python3_9 supportThomas Beierlein2020-12-191-1/+1
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/cartopy: Drop python3_6 supportThomas Beierlein2020-12-191-1/+1
| | | | | | | | As package depends on sci-libs/shapely which no longer provides support for python3_6 we drop it here too. Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* Revert "sci-libs/cartopy: Add python3_9 support and drop 3_6"Matt Turner2020-12-181-1/+1
| | | | | | | | This reverts commit be004dc155e56999bfbc34beadf96d565f17a171. This commit broke the tree for sci-visualization/pythonprop. Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/cartopy: Add python3_9 support and drop 3_6Thomas Beierlein2020-12-181-1/+1
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/volk: bumpRick Farina2020-12-182-3/+3
| | | | | | | properly set subslot Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/pyshp: Drop oldThomas Beierlein2020-12-182-26/+0
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/geos: Aaron W. Swenson2020-12-181-1/+1
| | | | Signed-off-by: Aaron W. Swenson <titanofold@gentoo.org>
* sci-libs/geos: Aaron W. Swenson2020-12-182-13/+8
| | | | | | | | | Upstream mistakenly released rc1 as 3.9.0. So, we need a new Manifest entry to get the real 3.9.0. Additionally, did some minor cleanup of the ebuild itself. Signed-off-by: Aaron W. Swenson <titanofold@gentoo.org>
* sci-libs/geos: Upstream dropped ruby and python supportDaniel M. Weeks2020-12-181-8/+1
| | | | | | | | Bug: https://bugs.gentoo.org/759295 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Daniel M. Weeks <dan@danweeks.net> Closes: https://github.com/gentoo/gentoo/pull/18619 Signed-off-by: Aaron W. Swenson <titanofold@gentoo.org>
* sci-libs/pyshp: Add python3_9 supportThomas Beierlein2020-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/scikits_optimization: Remove last-rited pkgMichał Górny2020-12-163-43/+0
| | | | | Closes: https://bugs.gentoo.org/749297 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_timeseries: Remove last-rited pkgMichał Górny2020-12-163-67/+0
| | | | | Closes: https://bugs.gentoo.org/749297 Signed-off-by: Michał Górny <mgorny@gentoo.org>