From 56bd759df1d0c750a065b8c845e93d5dfa6b549d Mon Sep 17 00:00:00 2001 From: "Robin H. Johnson" Date: Sat, 8 Aug 2015 13:49:04 -0700 Subject: proj/gentoo: Initial commit MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson X-Thanks: Alec Warner - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring - wrote much python to improve cvs2svn X-Thanks: Rich Freeman - validation scripts X-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed --- sci-biology/kalign/Manifest | 1 + sci-biology/kalign/kalign-2.03-r1.ebuild | 33 ++++++++++++++++++++++++++++++++ sci-biology/kalign/kalign-2.03.ebuild | 27 ++++++++++++++++++++++++++ sci-biology/kalign/metadata.xml | 5 +++++ 4 files changed, 66 insertions(+) create mode 100644 sci-biology/kalign/Manifest create mode 100644 sci-biology/kalign/kalign-2.03-r1.ebuild create mode 100644 sci-biology/kalign/kalign-2.03.ebuild create mode 100644 sci-biology/kalign/metadata.xml (limited to 'sci-biology/kalign') diff --git a/sci-biology/kalign/Manifest b/sci-biology/kalign/Manifest new file mode 100644 index 000000000000..6250f54bc17b --- /dev/null +++ b/sci-biology/kalign/Manifest @@ -0,0 +1 @@ +DIST kalign_2.03.orig.tar.gz 114022 SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0 diff --git a/sci-biology/kalign/kalign-2.03-r1.ebuild b/sci-biology/kalign/kalign-2.03-r1.ebuild new file mode 100644 index 000000000000..4422bad730c0 --- /dev/null +++ b/sci-biology/kalign/kalign-2.03-r1.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit toolchain-funcs + +DESCRIPTION="Global and progressive multiple sequence alignment" +HOMEPAGE="http://msa.cgb.ki.se/" +SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="amd64 x86" + +S="${WORKDIR}"/${PN} + +src_prepare() { + sed \ + -e "s/\$(CFLAGS) \$(OBJECTS)/\$(LDFLAGS) &/" \ + -i Makefile.in || die +} + +src_compile() { + emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" +} + +src_install() { + dobin ${PN} + dodoc README +} diff --git a/sci-biology/kalign/kalign-2.03.ebuild b/sci-biology/kalign/kalign-2.03.ebuild new file mode 100644 index 000000000000..3862e49eaf7f --- /dev/null +++ b/sci-biology/kalign/kalign-2.03.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +DESCRIPTION="Global and progressive multiple sequence alignment" +HOMEPAGE="http://msa.cgb.ki.se/" +SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="amd64 x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/${PN}" + +src_unpack() { + unpack ${A} + sed -i 's/^CFLAGS.*= -O9/CFLAGS := ${CFLAGS} -O3/' "${S}"/Makefile.in +} + +src_install() { + dobin kalign + dodoc README +} diff --git a/sci-biology/kalign/metadata.xml b/sci-biology/kalign/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-biology/kalign/metadata.xml @@ -0,0 +1,5 @@ + + + + sci-biology + -- cgit v1.2.3-65-gdbad