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DEFINED_PHASES=configure install postinst prepare setup
DEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-libs/boost:=[threads] python_single_target_python2_7? ( dev-python/intervaltree[python_targets_python2_7(-)] dev-python/sortedcontainers[python_targets_python2_7(-)] ) sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
EAPI=6
HOMEPAGE=https://ccb.jhu.edu/software/tophat/
IUSE=debug +python_targets_python2_7 +python_single_target_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=Artistic
RDEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-libs/boost:=[threads] python_single_target_python2_7? ( dev-python/intervaltree[python_targets_python2_7(-)] dev-python/sortedcontainers[python_targets_python2_7(-)] ) sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
SLOT=0
SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
_eclasses_=autotools ea7865c8fba1ea8d3639f355fffe1a3c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 flag-o-matic dc34234e8c43343da45853da22dcf14b libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 36ac48e647d2627de28c87aaffb94753 python-utils-r1 611c493a4cfef5254350fabc04b606f5 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
_md5_=c9fc6f9296f2363e8ed22fc512275f32
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