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| author |   Jeffrey Gardner <je_fro@gentoo.org> | 2008-06-22 19:30:32 +0000 |
|---|---|---|
| committer | Jeffrey Gardner <je_fro@gentoo.org> | 2008-06-22 19:30:32 +0000 |
| commit | 81ef4fa9aa6a062f0577c8a383aac9d12200aa3b (patch) | |
| tree | 839a91b8b1303dac3b2a51a5910a3e392bf7356e | |
| parent | Version bump. bug #212010 (diff) | |
| download | gentoo-2-81ef4fa9aa6a062f0577c8a383aac9d12200aa3b.tar.gz gentoo-2-81ef4fa9aa6a062f0577c8a383aac9d12200aa3b.tar.bz2 gentoo-2-81ef4fa9aa6a062f0577c8a383aac9d12200aa3b.zip | |
Rely on squid from hmmer. Fixes bug #208462
(Portage version: 2.2_rc1/cvs/Linux 2.6.25-gentoo-r5 x86_64)
| -rw-r--r-- | sci-biology/qrna/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/qrna/qrna-2.0.3c.ebuild | 20 |
2 files changed, 14 insertions, 14 deletions
diff --git a/sci-biology/qrna/ChangeLog b/sci-biology/qrna/ChangeLog index 89cde4ceae81..8a6d952d00e8 100644 --- a/sci-biology/qrna/ChangeLog +++ b/sci-biology/qrna/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/qrna -# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.16 2007/05/22 01:08:10 ribosome Exp $ +# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.17 2008/06/22 19:30:32 je_fro Exp $ + + 22 Jun 2008; Jeff Gardner <je_fro@gentoo.org> qrna-2.0.3c.ebuild: + No longer compiling files in squid02 because they are newer in hmmer and + we avoid collisions. qrna now depends on hmmer. See bug #208462. 22 May 2007; Olivier Fisette <ribosome@gentoo.org> qrna-2.0.3c.ebuild: Updated home page. diff --git a/sci-biology/qrna/qrna-2.0.3c.ebuild b/sci-biology/qrna/qrna-2.0.3c.ebuild index dc984942a175..5a8db6f36c96 100644 --- a/sci-biology/qrna/qrna-2.0.3c.ebuild +++ b/sci-biology/qrna/qrna-2.0.3c.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2007 Gentoo Foundation +# Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.9 2007/05/22 01:08:10 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.10 2008/06/22 19:30:32 je_fro Exp $ inherit toolchain-funcs @@ -10,22 +10,20 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2" LICENSE="GPL-2" SLOT="0" -KEYWORDS="amd64 ppc x86" +KEYWORDS="amd64 ~ppc x86" IUSE="" -DEPEND="dev-lang/perl" +DEPEND="dev-lang/perl + sci-biology/hmmer" src_compile () { sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ -e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \ -i src/Makefile squid/Makefile - sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ - -e "s/CFLAGS = -g -O2/CFLAGS = ${CFLAGS}/" \ - -i squid02/Makefile + cd "${S}"/squid emake || die - cd "${S}"/squid02 - emake || die + cd "${S}"/src emake || die } @@ -33,9 +31,7 @@ src_compile () { src_install () { cd "${S}"/src dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle || die - cd "${S}"/squid02 - dobin afetch alistat compalign compstruct revcomp seqsplit seqstat \ - sfetch shuffle sindex sreformat translate weight || die + cd "${S}" dobin scripts/* || die |