Moving to sci-biology/clustalx

5 files changed, 0 insertions, 88 deletions

diff --git a/app-sci/clustalx/ChangeLog b/app-sci/clustalx/ChangeLog
deleted file mode 100644
index c2263a4ffeba..000000000000
--- a/app-sci/clustalx/ChangeLog
+++ /dev/null
@@ -1,22 +0,0 @@
-# ChangeLog for app-sci/clustalx
-# Copyright 1999-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalx/ChangeLog,v 1.5 2004/11/22 22:17:53 sekretarz Exp $
-
-  22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> clustalx-1.83.ebuild:
-  Added to ~amd64, bug #72084
-
-  18 Nov 2004; Michael Sterrett <mr_bones_@gentoo.org> clustalx-1.83.ebuild:
-  needs stable app-sci/ncbi-tools first
-
-  17 Nov 2004; Olivier Fisette <ribosome@gentoo.org> clustalx-1.83.ebuild:
-  Added to x86. Use toolchain-funcs rather than the gcc eclass.
-
-  14 Oct 2004; Olivier Fisette <ribosome@gentoo.org> clustalx-1.83.ebuild:
-  Use gcc.eclass rather than ${CC}.
-
-*clustalx-1.83 (06 Oct 2004)
-
-  06 Oct 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +clustalx-1.83.ebuild:
-  Initial import.
-
diff --git a/app-sci/clustalx/Manifest b/app-sci/clustalx/Manifest
deleted file mode 100644
index 84f965bc69e3..000000000000
--- a/app-sci/clustalx/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 85d7c090d64f675746361e68fce19490 ChangeLog 827
-MD5 272b5b012593acd07a7a60b8b64e6761 metadata.xml 509
-MD5 a6bdceb4558eaaa860058204ff1448f2 clustalx-1.83.ebuild 1358
-MD5 800c4da737d4fb9af3d8ffb7f6f44892 files/digest-clustalx-1.83 68
diff --git a/app-sci/clustalx/clustalx-1.83.ebuild b/app-sci/clustalx/clustalx-1.83.ebuild
deleted file mode 100644
index d6ddeba759fc..000000000000
--- a/app-sci/clustalx/clustalx-1.83.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalx/clustalx-1.83.ebuild,v 1.7 2004/12/23 18:56:30 ribosome Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
-HOMEPAGE="http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/"
-SRC_URI="ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalX/clustalx1.83.sun.tar.gz"
-LICENSE="public-domain"
-
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE=""
-
-DEPEND="sci-biology/ncbi-tools
-	sci-biology/clustalw
-	virtual/x11"
-
-S="${WORKDIR}/${PN}${PV}.sun"
-
-src_unpack() {
-	unpack ${A}
-	cd ${S}
-	cp makefile.linux makefile
-	sed -i -e "s/CC	= cc/CC	= $(tc-getCC)/" makefile
-	sed -i -e "s/CFLAGS  = -c -O/CFLAGS  = -c ${CFLAGS}/" makefile
-	sed -i -e "s/LFLAGS	= -O -lm/LFLAGS	= -lm ${CFLAGS}/" makefile
-	sed -i -e "s%-I/usr/bio/src/ncbi/include%-I/usr/include/ncbi%" makefile
-	sed -i -e "s%-L/usr/bio/src/ncbi/lib -L/usr/ccs/lib -L/usr/X11R6/lib%-L/usr/lib -L/usr/X11R6/lib%" makefile
-	sed -i -e "s%clustalx_help%/usr/share/doc/${PF}/clustalx_help%" clustalx.c
-	sed -i -e "s%clustalw.doc%../clustalw.doc%" clustalx.html
-}
-
-src_compile() {
-	make || die
-}
-
-src_install() {
-	dobin clustalx
-
-	dodoc README_X
-	dohtml clustalx.html
-
-	insinto /usr/share/doc/${PF}
-	doins clustalx_help clustalw.doc
-}
diff --git a/app-sci/clustalx/files/digest-clustalx-1.83 b/app-sci/clustalx/files/digest-clustalx-1.83
deleted file mode 100644
index 9d0832e69fb6..000000000000
--- a/app-sci/clustalx/files/digest-clustalx-1.83
+++ /dev/null
@@ -1 +0,0 @@
-MD5 732538fe5fea04f4d5dd665e84c3b9ab clustalx1.83.sun.tar.gz 860205
diff --git a/app-sci/clustalx/metadata.xml b/app-sci/clustalx/metadata.xml
deleted file mode 100644
index 8ce831f76510..000000000000
--- a/app-sci/clustalx/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>ribosome@gentoo.org</email>
-		<name>Olivier Fisette</name>
-	</maintainer>
-	<herd>sci</herd>
-	<longdescription>
-		Clustal X is a graphical interface for the ClustalW multiple sequence
-		alignment program. It provides an integrated environment for performing
-		multiple sequence and profile alignments and analysing the results.
-	</longdescription>
-</pkgmetadata>