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| author |   Olivier Fisette <ribosome@gentoo.org> | 2004-06-23 17:24:57 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2004-06-23 17:24:57 +0000 |
| commit | 6b7993357851e91e8804cb8e6820fe8c286eee1e (patch) | |
| tree | b1989e48b6ac80567d5988b9a148ce52498fb7b9 /app-sci/primer3 | |
| parent | License for upcoming app-sci/primer3 package (diff) | |
| download | gentoo-2-6b7993357851e91e8804cb8e6820fe8c286eee1e.tar.gz gentoo-2-6b7993357851e91e8804cb8e6820fe8c286eee1e.tar.bz2 gentoo-2-6b7993357851e91e8804cb8e6820fe8c286eee1e.zip | |
Initial import for package app-sci/primer3
Diffstat (limited to 'app-sci/primer3')
| -rw-r--r-- | app-sci/primer3/ChangeLog | 11 | ||||
| -rw-r--r-- | app-sci/primer3/Manifest | 4 | ||||
| -rw-r--r-- | app-sci/primer3/files/digest-primer3-0.9 | 1 | ||||
| -rw-r--r-- | app-sci/primer3/metadata.xml | 13 | ||||
| -rw-r--r-- | app-sci/primer3/primer3-0.9.ebuild | 23 |
5 files changed, 52 insertions, 0 deletions
diff --git a/app-sci/primer3/ChangeLog b/app-sci/primer3/ChangeLog new file mode 100644 index 000000000000..bd1ab07243aa --- /dev/null +++ b/app-sci/primer3/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for app-sci/primer3 +# Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/primer3/ChangeLog,v 1.1 2004/06/23 17:24:57 ribosome Exp $ + +*primer3-0.9 (23 Jun 2004) + + 23 Jun 2004; Olivier Fisette <ribosome@gentoo.org> + primer3-0.9.ebuild, metadata.xml : + Initial import. Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>. + Reference: Gentoo Bugzilla, bug #54036 + diff --git a/app-sci/primer3/Manifest b/app-sci/primer3/Manifest new file mode 100644 index 000000000000..63220415c3f7 --- /dev/null +++ b/app-sci/primer3/Manifest @@ -0,0 +1,4 @@ +MD5 be734148d7f328d6c08fd405cfd1719a ChangeLog 451 +MD5 a48298164409d3aaa508aed070bcdce7 metadata.xml 616 +MD5 d4eee34b04231b6aa65be7efb037d9e2 primer3-0.9.ebuild 506 +MD5 555316d30a4f61fdbd084eca62461196 files/digest-primer3-0.9 68 diff --git a/app-sci/primer3/files/digest-primer3-0.9 b/app-sci/primer3/files/digest-primer3-0.9 new file mode 100644 index 000000000000..32f6754ad0b1 --- /dev/null +++ b/app-sci/primer3/files/digest-primer3-0.9 @@ -0,0 +1 @@ +MD5 1ae09013c982eb67953cc4dd5b837088 primer3_0_9_test.tar.gz 948375 diff --git a/app-sci/primer3/metadata.xml b/app-sci/primer3/metadata.xml new file mode 100644 index 000000000000..81bcc3da0533 --- /dev/null +++ b/app-sci/primer3/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci</herd> + <longdescription> + Primer3 picks primers for PCR reactions, considering: oligonucleotide + melting temperature, size, GC content, and primer-dimer possibilities; + PCR product size; positional constraints within the source sequence; + and miscellaneous other constraints. All of these criteria are + user-specifiable as constraints, and some are specifiable as terms in + an objective function that characterizes an optimal primer pair. + </longdescription> +</pkgmetadata> diff --git a/app-sci/primer3/primer3-0.9.ebuild b/app-sci/primer3/primer3-0.9.ebuild new file mode 100644 index 000000000000..bd91826152db --- /dev/null +++ b/app-sci/primer3/primer3-0.9.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2004 Gentoo Technologies, Inc. +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/primer3/primer3-0.9.ebuild,v 1.1 2004/06/23 17:24:57 ribosome Exp $ + +DESCRIPTION="Design primers for PCR reactions." +HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html" +SRC_URI="http://frodo.wi.mit.edu/primer3/primer3_0_9_test.tar.gz" +LICENSE="whitehead" + +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +S=${WORKDIR}/${PN}_0_9_test/src + +src_compile() { + emake || die +} + +src_install () { + dobin primer3_core + dodoc release_notes ../README ../example +} |