sci-biology/cufflinks: Version BUmp

(Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

2 files changed, 45 insertions, 1 deletions

diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog
index 58f03a12e14a..7a6426be6048 100644
--- a/sci-biology/cufflinks/ChangeLog
+++ b/sci-biology/cufflinks/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/cufflinks
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.7 2014/09/25 15:21:35 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.8 2014/09/25 16:11:26 jlec Exp $
+
+*cufflinks-2.2.1 (25 Sep 2014)
+
+  25 Sep 2014; Justin Lecher <jlec@gentoo.org> +cufflinks-2.2.1.ebuild:
+  Version BUmp
 
   25 Sep 2014; Justin Lecher <jlec@gentoo.org> cufflinks-1.3.0-r1.ebuild:
   Fix dep due to uncompatible samtools release
diff --git a/sci-biology/cufflinks/cufflinks-2.2.1.ebuild b/sci-biology/cufflinks/cufflinks-2.2.1.ebuild
new file mode 100644
index 000000000000..2c59840e5e83
--- /dev/null
+++ b/sci-biology/cufflinks/cufflinks-2.2.1.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild,v 1.1 2014/09/25 16:11:26 jlec Exp $
+
+EAPI=5
+
+inherit autotools-utils flag-o-matic toolchain-funcs
+
+DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq"
+HOMEPAGE="http://cufflinks.cbcb.umd.edu/"
+SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="Artistic"
+IUSE="debug"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="
+	>=sci-biology/samtools-0.1.18
+	<sci-biology/samtools-1
+	>=dev-libs/boost-1.47.0:=
+	dev-cpp/eigen:3
+"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+	append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3)
+	autotools-utils_src_prepare
+}
+
+src_configure() {
+	local myeconfargs=(
+		--disable-optim
+		--with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/"
+		--with-bam="${EPREFIX}/usr/"
+		$(use_enable debug)
+	)
+	autotools-utils_src_configure
+}