Version bump, drop old

(Portage version: 2.2_rc86/cvs/Linux x86_64)

3 files changed, 11 insertions, 56 deletions

diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index a66ffc03fb6e..38ee796eebc2 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/mira
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.9 2010/06/28 21:32:20 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.10 2010/09/26 08:16:56 weaver Exp $
+
+*mira-3.2.0 (26 Sep 2010)
+
+  26 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> -mira-3.0.0.ebuild,
+  -mira-3.0.3.ebuild, +mira-3.2.0.ebuild:
+  Version bump, drop old
 
   28 Jun 2010; Justin Lecher <jlec@gentoo.org> mira-3.0.0.ebuild,
   mira-3.0.3.ebuild, mira-3.0.5.ebuild:
diff --git a/sci-biology/mira/mira-3.0.0.ebuild b/sci-biology/mira/mira-3.0.0.ebuild
deleted file mode 100644
index 3e2c7b2a8e47..000000000000
--- a/sci-biology/mira/mira-3.0.0.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild,v 1.5 2010/06/28 21:32:20 jlec Exp $
-
-EAPI="3"
-
-MIRA_3RDPARTY_PV="31-01-2010"
-
-inherit autotools base multilib
-
-DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
-HOMEPAGE="http://www.chevreux.org/projects_mira.html"
-SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
-	mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="doc"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
-
-CDEPEND=">=dev-libs/boost-1.35.0"
-DEPEND="${CDEPEND}
-	dev-libs/expat
-	doc? ( >=app-text/texlive-core-2009 )"
-RDEPEND="${CDEPEND}"
-
-src_prepare() {
-	find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
-	epatch "${FILESDIR}"/${P}-asneeded.patch
-	AT_M4DIR="config/m4" eautoreconf
-}
-
-src_configure() {
-	econf \
-		--with-boost="${EPREFIX}"/usr/$(get_libdir) \
-		--with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
-		--with-boost-thread=boost_thread-mt
-}
-
-src_compile() {
-	base_src_compile
-	if use doc; then emake -C doc clean docs || die; fi
-}
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL
-	find doc/docs/man -type f | xargs doman
-	find doc/docs/texinfo -type f | xargs doinfo
-	dobin "${WORKDIR}"/3rdparty/{sff_extract,*.pl}
-}
diff --git a/sci-biology/mira/mira-3.0.3.ebuild b/sci-biology/mira/mira-3.2.0.ebuild
index e4c046f191e3..792894fb38f8 100644
--- a/sci-biology/mira/mira-3.0.3.ebuild
+++ b/sci-biology/mira/mira-3.2.0.ebuild
@@ -1,10 +1,10 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.3.ebuild,v 1.2 2010/06/28 21:32:20 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.2.0.ebuild,v 1.1 2010/09/26 08:16:56 weaver Exp $
 
 EAPI="3"
 
-MIRA_3RDPARTY_PV="06-03-2010"
+MIRA_3RDPARTY_PV="17-04-2010"
 
 inherit autotools base multilib
 
@@ -18,7 +18,7 @@ SLOT="0"
 IUSE="doc"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
 
-CDEPEND=">=dev-libs/boost-1.35.0"
+CDEPEND=">=dev-libs/boost-1.41.0-r3"
 DEPEND="${CDEPEND}
 	dev-libs/expat
 	doc? ( >=app-text/texlive-core-2009 )"
@@ -47,5 +47,5 @@ src_install() {
 	dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL
 	find doc/docs/man -type f | xargs doman
 	find doc/docs/texinfo -type f | xargs doinfo
-	dobin "${WORKDIR}"/3rdparty/{sff_extract,*.pl}
+	dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl}
 }