sci-biology/ncbi-tools++: Drop old, duplicate with lower version number for new versioning schema

(Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

1 files changed, 76 insertions, 0 deletions

diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild
new file mode 100644
index 000000000000..5fc76935b330
--- /dev/null
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild
@@ -0,0 +1,76 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild,v 1.1 2012/11/02 19:00:59 jlec Exp $
+
+EAPI="3"
+
+inherit eutils flag-o-matic multilib toolchain-funcs
+
+MY_TAG="Jun_15_2010"
+MY_Y="${MY_TAG/*_/}"
+MY_P="ncbi_cxx--${MY_TAG}"
+
+DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
+SRC_URI="
+	ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz
+	http://dev.gentoo.org/~jlec/distfiles/${P}-asneeded.patch.xz"
+
+LICENSE="public-domain"
+SLOT="0"
+IUSE="sqlite mysql"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+DEPEND="
+	sqlite? ( dev-db/sqlite:3 )
+	mysql? ( virtual/mysql )"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+#	filter-ldflags -Wl,--as-needed
+#	append-ldflags -Wl,--no-undefined
+	sed -i -e 's/-print-file-name=libstdc++.a//' \
+		-e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
+		src/build-system/configure || die
+	epatch \
+		"${FILESDIR}"/${P}-gcc46.patch \
+		"${FILESDIR}"/${P}-gcc47.patch \
+		"${WORKDIR}"/${P}-asneeded.patch \
+		"${FILESDIR}"/${P}-libpng15.patch \
+		"${FILESDIR}"/${P}-glibc-214.patch
+
+	use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
+}
+
+src_configure() {
+	tc-export CXX CC
+# conf check for sqlite and mysql
+	"${S}"/configure --without-debug \
+		--with-bin-release \
+		--with-bincopy \
+		--without-static \
+		--with-dll \
+		--with-mt \
+		--prefix="${ED}"/usr \
+		--libdir="${ED}"/usr/$(get_libdir)/${PN} \
+		|| die
+}
+
+src_compile() {
+	emake all_r -C GCC*-Release*/build || die
+}
+
+src_install() {
+	emake install || die
+	# File collisions with sci-biology/ncbi-tools
+	rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
+
+	echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
+	doenvd "${S}/99${PN}"
+}
+
+pkg_postinst() {
+	einfo 'Please run "source /etc/profile" before using this package in the current shell.'
+}