Moved from app-sci/prosite to sci-biology/prosite.

11 files changed, 232 insertions, 0 deletions

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
new file mode 100644
index 000000000000..42380aaad905
--- /dev/null
+++ b/sci-biology/prosite/ChangeLog
@@ -0,0 +1,59 @@
+# ChangeLog for app-sci/prosite
+# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.1 2004/12/23 21:24:44 ribosome Exp $
+
+*prosite-18.41 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +prosite-18.38.ebuild, +prosite-18.39.ebuild, +prosite-18.40.ebuild,
+  +prosite-18.41.ebuild:
+  Moved from app-sci/prosite to sci-biology/prosite.
+
+*prosite-18.41 (13 Dec 2004)
+
+  13 Dec 2004; Olivier Fisette <ribosome@gentoo.org> prosite-18.40.ebuild,
+  +prosite-18.41.ebuild:
+  New version: 18.41. Added 18.40 to x86.
+
+*prosite-18.40 (23 Nov 2004)
+
+  23 Nov 2004; Olivier Fisette <ribosome@gentoo.org> prosite-18.39.ebuild,
+  +prosite-18.40.ebuild:
+  New version: 18.40. Added 18.39 to x86.
+
+*prosite-18.39 (08 Nov 2004)
+
+  08 Nov 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.36.ebuild,
+  prosite-18.38.ebuild, +prosite-18.39.ebuild:
+  New version (18.39). Added 18.38 to x86. Removed obsolete version.
+
+*prosite-18.38 (30 Oct 2004)
+
+  30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.32.ebuild,
+  prosite-18.36.ebuild, +prosite-18.38.ebuild:
+  Removed obsolete version (18.32). Added to x86 (18.36). New version (18.38).
+
+*prosite-18.36 (29 Sep 2004)
+
+  29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.26.ebuild,
+  prosite-18.32.ebuild, +prosite-18.36.ebuild:
+  Added x86 to 18.32. New version 18.36. Removed old version.
+
+*prosite-18.32 (10 Aug 2004)
+
+  10 Aug 2004; Olivier Fisette <ribosome@gentoo.org>
+  prosite-18.32.ebuild:
+  Updated package.
+  prosite-18.26.ebuild:
+  Added to x86.
+
+  26 Jun 2004; David Holm <dholm@gentoo.org> prosite-18.26.ebuild:
+  Added to ~ppc.
+
+*prosite-18.26 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  prosite-18.26.ebuild, metadata.xml :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54326
+
diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest
new file mode 100644
index 000000000000..552afc4f7883
--- /dev/null
+++ b/sci-biology/prosite/Manifest
@@ -0,0 +1,10 @@
+MD5 ad15788d597d8132164264bf5a47152e prosite-18.41.ebuild 1053
+MD5 1dc5f78c8c1ddac5f64b607d3415258e prosite-18.39.ebuild 1052
+MD5 1f57fc61b02617b80c7a46013804997e prosite-18.40.ebuild 1052
+MD5 9e6b6b03257c738eef4fc8d1244c10a4 ChangeLog 1717
+MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810
+MD5 c04f92d03ee5c94d9d769acfb3c9a949 prosite-18.38.ebuild 1052
+MD5 681e2770cee55b9f73f52416d5afff8b files/digest-prosite-18.38 67
+MD5 be30a2901bbe78916e8e5ba3121a7262 files/digest-prosite-18.39 67
+MD5 72e0289273b3085b31e4244ba04f1b13 files/digest-prosite-18.40 67
+MD5 9c2f10f8894ca2905205055e4b8d0063 files/digest-prosite-18.41 67
diff --git a/sci-biology/prosite/files/digest-prosite-18.38 b/sci-biology/prosite/files/digest-prosite-18.38
new file mode 100644
index 000000000000..d0aa4f243dd8
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-18.38
@@ -0,0 +1 @@
+MD5 50e94ad7380dc99ff3c6ecca4591b168 prosite-18.38.tar.bz2 2993998
diff --git a/sci-biology/prosite/files/digest-prosite-18.39 b/sci-biology/prosite/files/digest-prosite-18.39
new file mode 100644
index 000000000000..cd2c0bb30694
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-18.39
@@ -0,0 +1 @@
+MD5 1cbc9e4d8bed13494cfd513c98298b34 prosite-18.39.tar.bz2 2999823
diff --git a/sci-biology/prosite/files/digest-prosite-18.40 b/sci-biology/prosite/files/digest-prosite-18.40
new file mode 100644
index 000000000000..287302f8971c
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-18.40
@@ -0,0 +1 @@
+MD5 fd7ba3d6b00474d22cc0f3ed12ea986d prosite-18.40.tar.bz2 3021114
diff --git a/sci-biology/prosite/files/digest-prosite-18.41 b/sci-biology/prosite/files/digest-prosite-18.41
new file mode 100644
index 000000000000..0d3e1612952b
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-18.41
@@ -0,0 +1 @@
+MD5 682d5ce408604a01fa7c6b3c58c3a5b8 prosite-18.41.tar.bz2 3045746
diff --git a/sci-biology/prosite/metadata.xml b/sci-biology/prosite/metadata.xml
new file mode 100644
index 000000000000..bd408926e90a
--- /dev/null
+++ b/sci-biology/prosite/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		A protein families and domains database maintained at the Swiss
+		Institude for Bioinformatics. It consists of biologically significant
+		sites, patterns and profiles that help to reliably identify to which
+		known protein family (if any) a new sequence belongs. PROSITE currently
+		contains patterns and profiles specific for more than a thousand
+		protein families or domains. Each of these signatures comes with
+		documentation providing background information on the structure and
+		function of these proteins.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/prosite/prosite-18.38.ebuild b/sci-biology/prosite/prosite-18.38.ebuild
new file mode 100644
index 000000000000..0972736c6ac2
--- /dev/null
+++ b/sci-biology/prosite/prosite-18.38.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.38.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+HOMEPAGE="http://ca.expasy.org/${PN}"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="swiss-prot"
+SLOT="0"
+KEYWORDS="x86 ~ppc"
+IUSE="no-emboss no-rawdb"
+
+src_compile() {
+	# Index the database for use with EMBOSS if EMBOSS is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		mkdir PROSITE
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
+			"Indexing PROSITE failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins ${PN}.{doc,dat,lis}
+	fi
+	dodoc *.txt
+	dohtml prosuser.htm
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/*
+	fi
+}
diff --git a/sci-biology/prosite/prosite-18.39.ebuild b/sci-biology/prosite/prosite-18.39.ebuild
new file mode 100644
index 000000000000..6d049eb5f177
--- /dev/null
+++ b/sci-biology/prosite/prosite-18.39.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.39.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+HOMEPAGE="http://ca.expasy.org/${PN}"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="swiss-prot"
+SLOT="0"
+KEYWORDS="x86 ~ppc"
+IUSE="no-emboss no-rawdb"
+
+src_compile() {
+	# Index the database for use with EMBOSS if EMBOSS is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		mkdir PROSITE
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
+			"Indexing PROSITE failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins ${PN}.{doc,dat,lis}
+	fi
+	dodoc *.txt
+	dohtml prosuser.htm
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/*
+	fi
+}
diff --git a/sci-biology/prosite/prosite-18.40.ebuild b/sci-biology/prosite/prosite-18.40.ebuild
new file mode 100644
index 000000000000..3ccd78d15c51
--- /dev/null
+++ b/sci-biology/prosite/prosite-18.40.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.40.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+HOMEPAGE="http://ca.expasy.org/${PN}"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="swiss-prot"
+SLOT="0"
+KEYWORDS="x86 ~ppc"
+IUSE="no-emboss no-rawdb"
+
+src_compile() {
+	# Index the database for use with EMBOSS if EMBOSS is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		mkdir PROSITE
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
+			"Indexing PROSITE failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins ${PN}.{doc,dat,lis}
+	fi
+	dodoc *.txt
+	dohtml prosuser.htm
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/*
+	fi
+}
diff --git a/sci-biology/prosite/prosite-18.41.ebuild b/sci-biology/prosite/prosite-18.41.ebuild
new file mode 100644
index 000000000000..dd242da9aa71
--- /dev/null
+++ b/sci-biology/prosite/prosite-18.41.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.41.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+HOMEPAGE="http://ca.expasy.org/${PN}"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="swiss-prot"
+SLOT="0"
+KEYWORDS="~x86 ~ppc"
+IUSE="no-emboss no-rawdb"
+
+src_compile() {
+	# Index the database for use with EMBOSS if EMBOSS is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		mkdir PROSITE
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
+			"Indexing PROSITE failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins ${PN}.{doc,dat,lis}
+	fi
+	dodoc *.txt
+	dohtml prosuser.htm
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/*
+	fi
+}