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| author |   Michał Górny <mgorny@gentoo.org> | 2015-04-08 16:53:27 +0000 |
|---|---|---|
| committer | Michał Górny <mgorny@gentoo.org> | 2015-04-08 16:53:27 +0000 |
| commit | 68b3c41dd3d2b2f4d86dcc4a148dce27735bb920 (patch) | |
| tree | 5e696c29cef768324eacd7ab8bc8a0c233c63010 /sci-biology/rebase | |
| parent | Version bump to 0.77. Fix security bug 545946. (diff) | |
| download | gentoo-2-68b3c41dd3d2b2f4d86dcc4a148dce27735bb920.tar.gz gentoo-2-68b3c41dd3d2b2f4d86dcc4a148dce27735bb920.tar.bz2 gentoo-2-68b3c41dd3d2b2f4d86dcc4a148dce27735bb920.zip | |
Restore -1503 that was just marked stable, bug #545982.
(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key EFB4464E!)
Diffstat (limited to 'sci-biology/rebase')
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-1503.ebuild | 46 |
2 files changed, 52 insertions, 1 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index a57ba1db947e..c9987432d3f4 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.153 2015/04/08 14:19:37 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.154 2015/04/08 16:53:27 mgorny Exp $ + +*rebase-1503 (08 Apr 2015) + + 08 Apr 2015; Michał Górny <mgorny@gentoo.org> +rebase-1503.ebuild: + Restore -1503 that was just marked stable, bug #545982. 08 Apr 2015; Justin Lecher <jlec@gentoo.org> -rebase-1502.ebuild, -rebase-1503.ebuild: diff --git a/sci-biology/rebase/rebase-1503.ebuild b/sci-biology/rebase/rebase-1503.ebuild new file mode 100644 index 000000000000..c1698349fee8 --- /dev/null +++ b/sci-biology/rebase/rebase-1503.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1503.ebuild,v 1.5 2015/04/08 16:53:27 mgorny Exp $ + +EAPI=5 + +MY_PV=${PV#1} + +DESCRIPTION="A restriction enzyme database" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" + +SLOT="0" +LICENSE="public-domain" +KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris" +IUSE="emboss minimal" + +RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" +DEPEND="${RDEPEND}" + +RESTRICT="binchecks strip" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE || die + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \ + -protofile proto.${MY_PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${MY_PV} proto.${MY_PV} + fi + newdoc REBASE.DOC README + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ + fi +} |