Fix depend rules in make which break due to unbundling of htslib, #541134; use LD_LIBRARY_PATH druing tests

(Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

1 files changed, 17 insertions, 17 deletions

diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index 90cffb5fda8d..e0a28ca43ede 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -4,7 +4,7 @@ Hash: SHA512
 AUX samtools-0.1.19-buildsystem.patch 6227 SHA256 44c6e4df3ceb36e539716350ef10e0f4e348d524c5dfdb96ad7c9ccbed9570d0 SHA512 dd41a0ab20ad216273f38b42e6abafd70378bcf966403379e73d08c93e92f04ee79dae07baf7f626b30d57deea29d56a729928c18c5d012d950cfe10912adf3d WHIRLPOOL 9ba69f11b8071fe1c9a3269a482e1de0c6563a0a94b96bcef97a1442a6e4d594aea55b4e1c75381b6ed792e7e3e3809da80c9b8a22ec74af63c14315a51e9771
 AUX samtools-1.0-buildsystem.patch 1672 SHA256 fe82984a2475ce4666bd386bb6f1ab9aff4e6402dc02e671171f41ad082345c1 SHA512 b75a9c6a57fa5f4c4dc9eda529eb500f1828c6e0910922ac34869c0972661a4fa51a65b83a153905a090b4f67e0bb7a9316ecc33b04a09a46c74d2bd67c84cf6 WHIRLPOOL eb72243b5e2376df4c417e0b171eb3f71c11ca842014fc72f75463a4bebde11771484049a12650e9169f1c4ba390699af99ebf63d6459b4cc673195b273bedcc
 AUX samtools-1.1-buildsystem.patch 7030 SHA256 a4751ad60699c18c081ced0fa4f5bd494ad072bcc73147d16cf90b35aa9b0bca SHA512 cb0190cfb0d31a9feef068df285734d218b05dcc3b4fae95cb31007ed513986a571d4e0533e918b503c9e3d1fbef18af5c7371294218a5fd0e8837eda56c854a WHIRLPOOL b450a1d971f9e443b14c4a555d6cf43b3e6fc20c4a24ecba32faef47fbb4fbac49260feb92f056d54824721db787295bec3b5a682cec2c7dd6d5c0d1d0157b0b
-AUX samtools-1.2-buildsystem.patch 7087 SHA256 114c374befa57f72998e9de36d24a8608cd5441cb01abdb89c6297bb46764cc8 SHA512 cbf73266a34c8134bfa209f0a0e3d4ca644a36568cce28a4cce9c222d7d0c5f1014aee437f9ef6ba0b97f949fc39b77c2fdc801b5abdd39fe92a40279804cb1c WHIRLPOOL cdb1ab83a15209ce39d634d7528970966f774763d53ea67fbd720179ae378bc82f133bda9433f1b1a80cf0728e6c5d53c6c1d81aa6a0d882dde294ebd4c43c07
+AUX samtools-1.2-buildsystem.patch 9438 SHA256 b1032fc79e125303382a17270e30082ef014bde7b8322a80b1aff38d4a471bba SHA512 20b1d26f208e9917ce6d2aa7b83a90d83475c7fbbf891fee589f9899c61ee7c38eca2cbb0725ad90707692c799c605fb1a3d14305d93a960d9addd3dc9062675 WHIRLPOOL 9d2908914e590dbd1d5759478c9c2e7633a918206dc72cec748bd953f58a1301eabccdd5d6a36e23aa794666f9d4de89058b394447e9c7a945b66c4fa37df37a
 DIST samtools-0.1.12a.tar.bz2 355633 SHA256 377ed5cd2a4bb2b1ad572ca6fcafdd8ed644b67f01ab00fa020618fac11e59ac
 DIST samtools-0.1.19.tar.bz2 514507 SHA256 d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4 SHA512 d145f1d65eefefbdfb781945684b8b591419fb109ac7401a62cae65b9ca1e1271f001496e1038334ff9ab1c0e5bf9bcc059f70aaa273551193fbd68101fd188d WHIRLPOOL 7811388ae8b24c5d7a328d2da252b8d3afaefdab508bd97684d556d2d4ee60d9c8846ffa562beaa9d0c6a5e6bfac24fcd9d211dfee20383cf452609badc8ecd5
 DIST samtools-1.0.tar.bz2 4459669 SHA256 7340b843663c3f54a902a06f2f73c68198f3a62d29a2ed20671139957f7fd7c0 SHA512 5b80995c522d08b06a4c559f60a5e200d9085be7f44c3c9618db91e3de85e36c1473e42715eae8175520d7da3df8245bafa82e625d2fc08e0197adb395851693 WHIRLPOOL 2aa0f8639da9b0b828ca7296969e5c600b0e5452ad3231b914e4a7be418700906a4d695c928eaf837b643255567ec82cfadf0b53007e0f1e3a956856f6c4c832
@@ -15,25 +15,25 @@ EBUILD samtools-0.1.19-r2.ebuild 1474 SHA256 97a44dcd4e7236838f4263146a3a87d39f0
 EBUILD samtools-1.0-r1.ebuild 1554 SHA256 f63e30721951a432240284ce6d451fd1d497ea9350f3137321e4e0d7c0a433ba SHA512 240ae645a9e7591b3f32efb31d96810eef7f507a080e9cb1296494c7309416029c63f3e239238e3621f69f42a904de281f446cdd7d368683df790f6535025219 WHIRLPOOL 18b6b4073d4b5232dd0e1991b26026800f681c5aa4f5d374a1a288506555b5c756a48f58874bb14ba88b48996d413f24622c455edb344c7c6fa4dc928307af0e
 EBUILD samtools-1.0.ebuild 1488 SHA256 f1b8623d24fc3ce95b39ba1f66a334d9a0df1dd8880227fbb50a32cf96c800d5 SHA512 84b937c3b5143a84a8d9c2062e4e3b91b8a4fe5a50be379ce0dfecba19fc1735a90b1f7690762c7a33aede06229ff229e84a3c31a704ae56cb2241be33a88002 WHIRLPOOL ccc11832e93be31003f41fcd6789537f4c1cf16e0972f0d6cfcd6ef0dc4ee18e4d34907c8f5c32a84137f9bcc5bde2f5d7ea3e61d39e837b4bf0f2319930bb11
 EBUILD samtools-1.1.ebuild 1780 SHA256 7939d37f2dfea1a0f190a57bc02374a8787d4e6a21325677b6c175bc42e19561 SHA512 14be9b8002b38f2fe6f7f0c01629ada05539cba20476436f2de691cb8a73f8751e66045e81dc5aa01cb1fe7d2971cb660e6cc66c9191eba71bc3d87741b3a7b5 WHIRLPOOL 63e66aa4a04932f3cb5269d45d2d746ad712a9302dd1efb0c4a39cdaaf44e6c93a088429ad1b86533928897ed5f12a81a72a1d011123baacf29049850e109de1
-EBUILD samtools-1.2.ebuild 1781 SHA256 05529ff1ccf5e0077d2f0ea6f6b4c54cad3e8e7742973f216513918958d9ae8a SHA512 03702ef5df8f20afdb771eac48acc3d74c2508bc3f85b1be42deb792fb8db7dfc87b382dfb5c866077d2bea0857927309281beb0ab2a3ba161ddb1707af4bbc0 WHIRLPOOL b2607cd5468dc3dafd992cf893be1fb7707f2f591353937276495abe2eee953dc891dc781c09109b6b178c1be787a9e32252e9013cdb922438874d6b55aa5e88
-MISC ChangeLog 4250 SHA256 49c60673fe452a78ff5e313e41b4044ea4b0fd732961a3e2213b51c209c612c5 SHA512 1e3a403eec2f3f73098b68f4e262730bae9e12d86e9885649eba2e6c706d587be1a5b1261d342557575f0c0e05ed154bb59ca26d27541dcda0c405112cb00f79 WHIRLPOOL 53827d8f2153a4c33aec60da4c0d28aa1137e3362b3c7619deef8f6e5f921bed4fccd9e9a7acb4e02c879b83bd29abd73700730d9a70a4c7d26c97e539f26804
+EBUILD samtools-1.2.ebuild 1804 SHA256 1edae996713074dea4dba5f3fe1b981fd1f5a46c9faaca5aad77403458840949 SHA512 0e7967658953f4650740c66cbc3ce4ca3505ed5a4f0ecfda4da9eb6d2d440c9ce1058b4d4d421dba33af3902fadfe86cb90b2f2691d4c5b5ed29e97721eb6a2d WHIRLPOOL 95b8965d68f7bb89f49c13599d35c9e688209106a89aff113198270ebb141f9ee12806f37fc52ee37a73f1710715a891cfd24a06b6f9ebe8f0bf637d70aeaf82
+MISC ChangeLog 4471 SHA256 2665574c4f043d36975b745cbe63095a5ba73528b86b3ff13cd7db95c3e00fc4 SHA512 de09df0b969743f21d961f752973b59733bd0d1a3f117317e9391b1f2c3227b3b94bbc611cba27e3a8c74ab01b2d82fb04d3c761d17993a66bcc61e60568998d WHIRLPOOL 82e4635f4041c6b84326cee694dd25d9b5602a30a5d505f509b1175e2e34ac042705f2653fb3a879614302e4e6b2296fced682dfcbd4242237e969425af93b04
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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