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| author |   Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2009-12-21 03:29:14 +0000 |
|---|---|---|
| committer | Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2009-12-21 03:29:14 +0000 |
| commit | 19d73294a81806c4e59f65eb9201ebd91deb3fdc (patch) | |
| tree | 2df6a1f13d0a9f1eb6cdc640e5a0e8eb3c77b931 /sci-biology | |
| parent | Workaround entity parsing issue with openjade #238785 by Robert Wohlrab. (diff) | |
| download | gentoo-2-19d73294a81806c4e59f65eb9201ebd91deb3fdc.tar.gz gentoo-2-19d73294a81806c4e59f65eb9201ebd91deb3fdc.tar.bz2 gentoo-2-19d73294a81806c4e59f65eb9201ebd91deb3fdc.zip | |
Version bump. Set SUPPORT_PYTHON_ABIS.
(Portage version: 15123-svn/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.53.ebuild | 59 |
2 files changed, 66 insertions, 1 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index e05ced52d1f6..f9a198987706 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/biopython # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.38 2009/10/31 17:56:54 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.39 2009/12/21 03:29:14 arfrever Exp $ + +*biopython-1.53 (21 Dec 2009) + + 21 Dec 2009; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + +biopython-1.53.ebuild: + Version bump. Set SUPPORT_PYTHON_ABIS. 31 Oct 2009; Markus Meier <maekke@gentoo.org> biopython-1.52.ebuild: amd64/x86 stable, bug #290931 diff --git a/sci-biology/biopython/biopython-1.53.ebuild b/sci-biology/biopython/biopython-1.53.ebuild new file mode 100644 index 000000000000..9c53a58fc9c6 --- /dev/null +++ b/sci-biology/biopython/biopython-1.53.ebuild @@ -0,0 +1,59 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.53.ebuild,v 1.1 2009/12/21 03:29:14 arfrever Exp $ + +EAPI="2" +SUPPORT_PYTHON_ABIS="1" + +inherit base distutils eutils + +DESCRIPTION="Biopython - Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86" +IUSE="mysql postgres" + +RDEPEND="dev-python/numpy + >=dev-python/reportlab-2.0 + mysql? ( dev-python/mysql-python ) + postgres? ( dev-python/psycopg )" +DEPEND="${RDEPEND} + sys-devel/flex" +RESTRICT_PYTHON_ABIS="3.*" + +PATCHES=( + "${FILESDIR}/${PN}-1.51-flex.patch" +) + +DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS="CONTRIB DEPRECATED NEWS README" +PYTHON_MODNAME="Bio BioSQL" + +src_compile() { + distutils_src_compile +} + +src_test() { + cd Tests + + testing() { + PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py + } + python_execute_function -s testing +} + +src_install() { + distutils_src_install + + dodir "/usr/share/doc/${PF}" + cp -r Doc/* "${D}/usr/share/doc/${PF}/" || \ + die "Failed to install documentation." + dodir "/usr/share/${PN}" + rm -f Tests/*.pyc || \ + die "Failed to remove precompiled test files." + cp -r --preserve=mode Scripts Tests "${D}/usr/share/${PN}/" || \ + die "Failed to install shared files." +} |