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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-09-25 21:57:32 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-09-25 21:57:32 +0000 |
| commit | be67c10722e15b85ca04371517e25ef86eb9932c (patch) | |
| tree | 6b881d4c9dcbd8a2c20d54e5b8bc4e66d0190136 /sci-biology | |
| parent | Remove myself as maintainer. (diff) | |
| download | gentoo-2-be67c10722e15b85ca04371517e25ef86eb9932c.tar.gz gentoo-2-be67c10722e15b85ca04371517e25ef86eb9932c.tar.bz2 gentoo-2-be67c10722e15b85ca04371517e25ef86eb9932c.zip | |
Version bump
(Portage version: 2.2.0_alpha45/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gmap/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/gmap/gmap-2011.09.14.ebuild | 36 | ||||
| -rw-r--r-- | sci-biology/gmap/metadata.xml | 1 |
3 files changed, 43 insertions, 1 deletions
diff --git a/sci-biology/gmap/ChangeLog b/sci-biology/gmap/ChangeLog index b94b229c8d6d..5b42b51a3711 100644 --- a/sci-biology/gmap/ChangeLog +++ b/sci-biology/gmap/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/gmap # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.9 2011/05/21 19:02:38 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.10 2011/09/25 21:57:32 weaver Exp $ + +*gmap-2011.09.14 (25 Sep 2011) + + 25 Sep 2011; Andrey Kislyuk <weaver@gentoo.org> +gmap-2011.09.14.ebuild: + Version bump 21 May 2011; Andrey Kislyuk <weaver@gentoo.org> +gmap-2011.03.28.ebuild: Version bump diff --git a/sci-biology/gmap/gmap-2011.09.14.ebuild b/sci-biology/gmap/gmap-2011.09.14.ebuild new file mode 100644 index 000000000000..e58b0dbe2ca0 --- /dev/null +++ b/sci-biology/gmap/gmap-2011.09.14.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2011.09.14.ebuild,v 1.1 2011/09/25 21:57:32 weaver Exp $ + +EAPI="2" + +MY_PV=${PV//./-} + +DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences" +HOMEPAGE="http://www.gene.com/share/gmap/" +SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz" + +LICENSE="gmap" +SLOT="0" +IUSE="+samtools +goby" +KEYWORDS="~amd64 ~x86" + +DEPEND="samtools? ( sci-biology/samtools ) + goby? ( sci-biology/goby-cpp )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/gmap-${MY_PV}" + +src_configure() { + econf $(use_with samtools) \ + $(use_with goby goby /usr) +} + +src_install() { + einstall || die + dodoc AUTHORS ChangeLog README +} + +src_test() { + emake check || die +} diff --git a/sci-biology/gmap/metadata.xml b/sci-biology/gmap/metadata.xml index 5ee10ffeb6d4..373576572928 100644 --- a/sci-biology/gmap/metadata.xml +++ b/sci-biology/gmap/metadata.xml @@ -8,5 +8,6 @@ <herd>sci-biology</herd> <use> <flag name='samtools'>Enable support for samtools</flag> + <flag name='goby'>Enable support for goby</flag> </use> </pkgmetadata> |