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| author |   Justin Lecher <jlec@gentoo.org> | 2010-03-07 11:00:06 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2010-03-07 11:00:06 +0000 |
| commit | 8d62ea754d0023a549ca676216c676269ebede60 (patch) | |
| tree | 1322ae732f233cc6f84381325bd0506b37dbbaa0 /sci-chemistry/ksdssp | |
| parent | C++ lib to handle pdb files (diff) | |
| download | gentoo-2-8d62ea754d0023a549ca676216c676269ebede60.tar.gz gentoo-2-8d62ea754d0023a549ca676216c676269ebede60.tar.bz2 gentoo-2-8d62ea754d0023a549ca676216c676269ebede60.zip | |
ksdssp is an open source implementation of the algorithm described in Wolfgang Kabsch and Christian Sander, "Dictionary of Protein SecondaryStructure: Pattern Recognition of Hydrogen-Bonded and Geometrical Features," Biopolymers, 22, 2577-2637 (1983)
(Portage version: 2.2_rc65/cvs/Linux x86_64)
Diffstat (limited to 'sci-chemistry/ksdssp')
| -rw-r--r-- | sci-chemistry/ksdssp/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-chemistry/ksdssp/ksdssp-040728.ebuild | 45 | ||||
| -rw-r--r-- | sci-chemistry/ksdssp/metadata.xml | 8 |
3 files changed, 66 insertions, 0 deletions
diff --git a/sci-chemistry/ksdssp/ChangeLog b/sci-chemistry/ksdssp/ChangeLog new file mode 100644 index 000000000000..85ba3343707b --- /dev/null +++ b/sci-chemistry/ksdssp/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-chemistry/ksdssp +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ksdssp/ChangeLog,v 1.1 2010/03/07 11:00:06 jlec Exp $ + +*ksdssp-040728 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> +ksdssp-040728.ebuild, + +metadata.xml: + ksdssp is an open source implementation of the algorithm described in + Wolfgang Kabsch and Christian Sander, "Dictionary of Protein Secondary + Structure: Pattern Recognition of Hydrogen-Bonded and Geometrical + Features," Biopolymers, 22, 2577-2637 (1983). + diff --git a/sci-chemistry/ksdssp/ksdssp-040728.ebuild b/sci-chemistry/ksdssp/ksdssp-040728.ebuild new file mode 100644 index 000000000000..08c748ad09b2 --- /dev/null +++ b/sci-chemistry/ksdssp/ksdssp-040728.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ksdssp/ksdssp-040728.ebuild,v 1.1 2010/03/07 11:00:06 jlec Exp $ + +EAPI="3" + +inherit toolchain-funcs + +DESCRIPTION="ksdssp is an open source implementation of dssp" +HOMEPAGE="http://www.cgl.ucsf.edu/Overview/software.html" +SRC_URI="mirror://gentoo/${P}.shar" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +LICENSE="as-is" +IUSE="" + +RDEPEND="sci-libs/libpdb++" +DEPEND=" + ${RDEPEND} + app-arch/sharutils" + +S="${WORKDIR}"/${PN} + +src_unpack() { + "${EPREFIX}"/usr/bin/unshar "${DISTDIR}"/${A} +} + +src_compile() { + emake \ + CXX="$(tc-getCXX)" \ + PDBINCDIR="${EPREFIX}/usr/include/libpdb++" \ + BINDIR="${EPREFIX}/usr/bin" \ + .TARGET="${PN}.csh" \ + .CURDIR="${S}" \ + CC="$(tc-getCXX)" \ + LINKER="$(tc-getCXX)" \ + OPT="${CXXFLAGS}" \ + LFLAGS="${LDFLAGS}" \ + ${PN} ${PN}.csh || die +} + +src_install() { + dobin ${PN}{,.csh} || die +} diff --git a/sci-chemistry/ksdssp/metadata.xml b/sci-chemistry/ksdssp/metadata.xml new file mode 100644 index 000000000000..c6856dc7f2cf --- /dev/null +++ b/sci-chemistry/ksdssp/metadata.xml @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci</herd> +<maintainer> + <email>jlec@gentoo.org</email> +</maintainer> +</pkgmetadata> |