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author | Justin Lecher <jlec@gentoo.org> | 2013-05-10 19:57:31 +0000 |
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committer | Justin Lecher <jlec@gentoo.org> | 2013-05-10 19:57:31 +0000 |
commit | 346fb6280873b72a83c137939fb159bf67cec209 (patch) | |
tree | 2603ddb51cad4e7de0f16d84bc087bd1d96d0a71 /sci-chemistry | |
parent | Clean old (diff) | |
download | gentoo-2-346fb6280873b72a83c137939fb159bf67cec209.tar.gz gentoo-2-346fb6280873b72a83c137939fb159bf67cec209.tar.bz2 gentoo-2-346fb6280873b72a83c137939fb159bf67cec209.zip |
sci-chemistry/pdb-tools: Fix double prefix installation
(Portage version: 2.2.0_alpha174/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/pdb-tools/ChangeLog | 7 | ||||
-rw-r--r-- | sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild | 78 |
2 files changed, 84 insertions, 1 deletions
diff --git a/sci-chemistry/pdb-tools/ChangeLog b/sci-chemistry/pdb-tools/ChangeLog index ad360d17a127..107d9894de74 100644 --- a/sci-chemistry/pdb-tools/ChangeLog +++ b/sci-chemistry/pdb-tools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-chemistry/pdb-tools # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.11 2013/04/26 10:20:16 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.12 2013/05/10 19:57:31 jlec Exp $ + +*pdb-tools-0.2.1-r1 (10 May 2013) + + 10 May 2013; Justin Lecher <jlec@gentoo.org> +pdb-tools-0.2.1-r1.ebuild: + Fix double prefix installation *pdb-tools-0.2.1 (26 Apr 2013) diff --git a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild b/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild new file mode 100644 index 000000000000..4a2e2c3b1fe9 --- /dev/null +++ b/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild @@ -0,0 +1,78 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild,v 1.1 2013/05/10 19:57:31 jlec Exp $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_6,2_7} pypy{1_8,1_9} ) + +inherit fortran-2 python-single-r1 toolchain-funcs + +MY_PN="pdbTools" + +DESCRIPTION="Tools for manipulating and doing calculations on wwPDB macromolecule structure files" +HOMEPAGE="http://code.google.com/p/pdb-tools/" +SRC_URI="http://${PN}.googlecode.com/files/${MY_PN}_${PV}.tar.gz" + +SLOT="0" +LICENSE="GPL-3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="" +DEPEND="" + +S="${WORKDIR}"/${MY_PN}_${PV} + +pkg_setup() { + python-single-r1_pkg_setup + fortran-2_pkg_setup +} + +src_prepare() { + sed \ + -e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \ + -i pdb_sasa.py || die + sed \ + -e "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" \ + -i pdb_satk.py || die + sed \ + -e 's:> %:>%:g' \ + -i pdb_seq.py || die +} + +src_compile() { + mkdir bin + cd satk + for i in *.f; do + einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}" + $(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die + $(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die + sed \ + -e "s:${i/.f}.out:${i/.f}:g" \ + -i ../pdb_satk.py || die + done +} + +src_install() { + local script + insinto /usr/share/${PN} + doins -r pdb_data/peptides + rm -rf pdb_data/peptides || die + + python_domodule helper pdb_data + + python_moduleinto ${PN/-/_} + python_domodule *.py + + for i in pdb_*.py; do + cat > ${i/.py} <<- EOF + #!${EPREFIX}/bin/bash + ${PYTHON} -O "$(python_get_sitedir)/${PN/-/_}/${i}" \$@ + EOF + dobin ${i/.py} + done + + dobin bin/* + dodoc README +} |