sci-chemistry/namd: Drop old

(Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)

4 files changed, 33 insertions, 242 deletions

diff --git a/sci-chemistry/namd/ChangeLog b/sci-chemistry/namd/ChangeLog
index cc6be40b771e..ff68934049f2 100644
--- a/sci-chemistry/namd/ChangeLog
+++ b/sci-chemistry/namd/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/namd
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.14 2011/07/20 16:57:24 pacho Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.15 2012/11/29 13:41:41 jlec Exp $
+
+  29 Nov 2012; Justin Lecher <jlec@gentoo.org> -namd-2.6.ebuild,
+  -namd-2.7_beta2.ebuild, namd-2.7_beta2-r1.ebuild:
+  Drop old
 
   20 Jul 2011; Pacho Ramos <pacho@gentoo.org> metadata.xml:
   Drop maintainer due retirement, bug #105599
diff --git a/sci-chemistry/namd/namd-2.6.ebuild b/sci-chemistry/namd/namd-2.6.ebuild
deleted file mode 100644
index ba8f4b8322dc..000000000000
--- a/sci-chemistry/namd/namd-2.6.ebuild
+++ /dev/null
@@ -1,96 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.6.ebuild,v 1.4 2009/09/23 19:55:56 patrick Exp $
-
-inherit eutils toolchain-funcs flag-o-matic
-
-DESCRIPTION="A powerful and highly parallelized molecular dynamics code"
-LICENSE="namd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/namd/"
-
-MY_PN="NAMD"
-MY_PV="2.6"
-
-SRC_URI="${MY_PN}_${MY_PV}_Source.tar.gz"
-
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
-	=sys-cluster/charm-5.9
-	=sci-libs/fftw-2*
-	=dev-lang/tcl-8.4*"
-
-RDEPEND=${DEPEND}
-
-CHARM="charm-5.9"
-NAMD_ARCH="Linux-i686-g++"
-
-NAMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD"
-
-S="${WORKDIR}/${MY_PN}_${MY_PV}_Source"
-
-pkg_nofetch() {
-	echo
-	einfo "Please download ${MY_PN}_${MY_PV}_Source.tar.gz from"
-	einfo "${NAMD_DOWNLOAD}"
-	einfo "after agreeing to the license and then move it to"
-	einfo "${DISTDIR}"
-	einfo "Be sure to select the ${MY_PV} version!"
-	echo
-}
-
-src_unpack() {
-	unpack ${A}
-
-	# apply a few small fixes to make NAMD compile and
-	# link to the proper libraries
-	epatch "${FILESDIR}"/namd-2.6-gentoo.patch
-
-	cd "${S}"
-
-	# proper compiler and cflags
-	sed -e "s/g++/$(tc-getCXX)/" \
-		-e "s/CXXOPTS = -O3 -march=pentiumpro -ffast-math -static/CXXOPTS = ${CXXFLAGS}/" \
-		-e "s/gcc/$(tc-getCC)/" \
-		-e "s/COPTS = -O3 -march=pentiumpro -ffast-math -static/COPTS = ${CFLAGS}/" \
-		-i arch/${NAMD_ARCH}.arch || \
-		die "Failed to setup ${NAMD_ARCH}.arch"
-
-	# configure
-	./config tcl fftw ${NAMD_ARCH}
-}
-
-src_compile() {
-	# build namd
-	cd "${S}/${NAMD_ARCH}"
-	emake || die "Failed to build namd"
-}
-
-src_install() {
-	cd "${S}/${NAMD_ARCH}"
-
-	# the binaries
-	dobin ${PN}2 psfgen flipbinpdb flipdcd || \
-		die "Failed to install binaries"
-
-	cd "${S}"
-
-	# some docs
-	dodoc announce.txt license.txt notes.txt || \
-		die "Failed to install docs"
-}
-
-pkg_postinst() {
-	echo
-	einfo "For detailed instructions on how to run and configure"
-	einfo "NAMD please consults the extensive documentation at"
-	einfo "http://www.ks.uiuc.edu/Research/namd/"
-	einfo "and the NAMD tutorials available at"
-	einfo "http://www.ks.uiuc.edu/Training/Tutorials/"
-	einfo "Have fun :)"
-	echo
-}
diff --git a/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild b/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild
index 3d0115b67590..dfdd78c57814 100644
--- a/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild
+++ b/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild
@@ -1,8 +1,10 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild,v 1.1 2010/06/24 20:37:03 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild,v 1.2 2012/11/29 13:41:41 jlec Exp $
 
-inherit eutils toolchain-funcs flag-o-matic
+EAPI=4
+
+inherit eutils multilib toolchain-funcs flag-o-matic
 
 DESCRIPTION="A powerful and highly parallelized molecular dynamics code"
 LICENSE="namd"
@@ -22,7 +24,7 @@ RESTRICT="fetch"
 DEPEND="
 	app-shells/tcsh
 	sys-cluster/charm
-	=sci-libs/fftw-2*
+	sci-libs/fftw:2.1
 	dev-lang/tcl"
 
 RDEPEND=${DEPEND}
@@ -43,61 +45,54 @@ pkg_nofetch() {
 	echo
 }
 
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
+src_prepare() {
 	CHARM_VERSION=$(best_version sys-cluster/charm | cut -d- -f3)
 
 	# apply a few small fixes to make NAMD compile and
 	# link to the proper libraries
-	epatch "${FILESDIR}"/namd-2.7_beta2-gentoo.patch
-	epatch "${FILESDIR}"/namd-2.7-ldflags.patch
-	epatch "${FILESDIR}"/namd-2.7-iml-dec.patch
-	sed -e "s:charm-6.1.3:charm-${CHARM_VERSION}:" \
-		Make.charm || \
-		die
+	epatch \
+		"${FILESDIR}"/namd-2.7_beta2-gentoo.patch \
+		"${FILESDIR}"/namd-2.7-ldflags.patch \
+		"${FILESDIR}"/namd-2.7-iml-dec.patch
+	sed \
+		-e "s:charm-6.1.3:charm-${CHARM_VERSION}:" \
+		-i Make.charm || die
 
 	rm -f charm-6.1.3.tar || die
 
 	# proper compiler and cflags
-	sed -e "s/g++/$(tc-getCXX)/" \
+	sed \
+		-e "s/g++/$(tc-getCXX)/" \
 		-e "s/gcc/$(tc-getCC)/" \
 		-e "s/CXXOPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/CXXOPTS = ${CXXFLAGS}/" \
 		-e "s/COPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/COPTS = ${CFLAGS}/" \
-		-i arch/${NAMD_ARCH}.arch || \
-		die "Failed to setup ${NAMD_ARCH}.arch"
+		-i arch/${NAMD_ARCH}.arch || die
 
-	sed -e "s/gentoo-libdir/$(get_libdir)/g" \
+	sed \
+		-e "s/gentoo-libdir/$(get_libdir)/g" \
 		-e "s/gentoo-charm/charm-${CHARM_VERSION}/g" \
 		-i Makefile || die "Failed gentooizing Makefile."
-	sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.fftw || \
-		die "Failed gentooizing Linux-x86_64.fftw."
-	sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.tcl || \
-		die "Failed gentooizing Linux-x86_64.tcl."
+	sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.fftw || die
+	sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.tcl || die
+}
 
+src_configure() {
 	# configure
-	./config ${NAMD_ARCH}
+	./config ${NAMD_ARCH} || die
 }
 
 src_compile() {
 	# build namd
 	cd "${S}/${NAMD_ARCH}"
-	emake || die "Failed to build namd"
+	emake
 }
 
 src_install() {
+	dodoc announce.txt license.txt notes.txt
 	cd "${S}/${NAMD_ARCH}"
 
 	# the binaries
-	dobin ${PN}2 psfgen flipbinpdb flipdcd || \
-		die "Failed to install binaries"
-
-	cd "${S}"
-
-	# some docs
-	dodoc announce.txt license.txt notes.txt || \
-		die "Failed to install docs"
+	dobin ${PN}2 psfgen flipbinpdb flipdcd
 }
 
 pkg_postinst() {
diff --git a/sci-chemistry/namd/namd-2.7_beta2.ebuild b/sci-chemistry/namd/namd-2.7_beta2.ebuild
deleted file mode 100644
index bc90354b4c61..000000000000
--- a/sci-chemistry/namd/namd-2.7_beta2.ebuild
+++ /dev/null
@@ -1,112 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2.ebuild,v 1.2 2010/06/24 20:37:03 jlec Exp $
-
-inherit eutils toolchain-funcs flag-o-matic
-
-DESCRIPTION="A powerful and highly parallelized molecular dynamics code"
-LICENSE="namd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/namd/"
-
-MY_PN="NAMD"
-MY_PV="2.7b2"
-
-SRC_URI="${MY_PN}_${MY_PV}_Source.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-RESTRICT="fetch"
-
-DEPEND="
-	app-shells/tcsh
-	sys-cluster/charm
-	=sci-libs/fftw-2*
-	dev-lang/tcl"
-
-RDEPEND=${DEPEND}
-
-NAMD_ARCH="Linux-x86_64-g++"
-
-NAMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD"
-
-S="${WORKDIR}/${MY_PN}_${MY_PV}_Source"
-
-pkg_nofetch() {
-	echo
-	einfo "Please download ${MY_PN}_${MY_PV}_Source.tar.gz from"
-	einfo "${NAMD_DOWNLOAD}"
-	einfo "after agreeing to the license and then move it to"
-	einfo "${DISTDIR}"
-	einfo "Be sure to select the ${MY_PV} version!"
-	echo
-}
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	CHARM_VERSION=$(best_version sys-cluster/charm | cut -d- -f3)
-
-	# apply a few small fixes to make NAMD compile and
-	# link to the proper libraries
-	epatch "${FILESDIR}"/namd-2.7_beta2-gentoo.patch
-	epatch "${FILESDIR}"/namd-2.7-ldflags.patch
-	epatch "${FILESDIR}"/namd-2.7-iml-dec.patch
-	sed -e "s:charm-6.1.3:charm-${CHARM_VERSION}:" \
-		Make.charm || \
-		die
-
-	rm -f charm-6.1.3.tar || die
-
-	# proper compiler and cflags
-	sed -e "s/g++/$(tc-getCXX)/" \
-		-e "s/gcc/$(tc-getCC)/" \
-		-e "s/CXXOPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/CXXOPTS = ${CXXFLAGS}/" \
-		-e "s/COPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/COPTS = ${CFLAGS}/" \
-		-i arch/${NAMD_ARCH}.arch || \
-		die "Failed to setup ${NAMD_ARCH}.arch"
-
-	sed -e "s/gentoo-libdir/$(get_libdir)/g" \
-		-e "s/gentoo-charm/charm-${CHARM_VERSION}/g" \
-		-i Makefile || die "Failed gentooizing Makefile."
-	sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.fftw || \
-		die "Failed gentooizing Linux-x86_64.fftw."
-	sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.tcl || \
-		die "Failed gentooizing Linux-x86_64.tcl."
-
-	# configure
-	./config ${NAMD_ARCH}
-}
-
-src_compile() {
-	# build namd
-	cd "${S}/${NAMD_ARCH}"
-	emake || die "Failed to build namd"
-}
-
-src_install() {
-	cd "${S}/${NAMD_ARCH}"
-
-	# the binaries
-	dobin ${PN}2 psfgen flipbinpdb flipdcd || \
-		die "Failed to install binaries"
-
-	cd "${S}"
-
-	# some docs
-	dodoc announce.txt license.txt notes.txt || \
-		die "Failed to install docs"
-}
-
-pkg_postinst() {
-	echo
-	einfo "For detailed instructions on how to run and configure"
-	einfo "NAMD please consults the extensive documentation at"
-	einfo "http://www.ks.uiuc.edu/Research/namd/"
-	einfo "and the NAMD tutorials available at"
-	einfo "http://www.ks.uiuc.edu/Training/Tutorials/"
-	einfo "Have fun :)"
-	echo
-}