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authorJustin Lecher <jlec@gentoo.org>2010-05-19 19:58:01 +0000
committerJustin Lecher <jlec@gentoo.org>2010-05-19 19:58:01 +0000
commitcb6a53d3a6c98096e2ec781d2888cbbdc3f189d6 (patch)
tree8468774a41ecfec39c417ebd79587fbfa998e99d /sci-chemistry
parentalpha/ia64/sparc stable wrt #316375 (diff)
downloadgentoo-2-cb6a53d3a6c98096e2ec781d2888cbbdc3f189d6.tar.gz
gentoo-2-cb6a53d3a6c98096e2ec781d2888cbbdc3f189d6.tar.bz2
gentoo-2-cb6a53d3a6c98096e2ec781d2888cbbdc3f189d6.zip
Todays Python patches
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/ccpn/ChangeLog9
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.3.1_p100409.ebuild186
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.3.1_p100415.ebuild186
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild (renamed from sci-chemistry/ccpn/ccpn-2.1.3.1_p100406.ebuild)2
4 files changed, 9 insertions, 374 deletions
diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog
index 68474e97366a..b4924b637062 100644
--- a/sci-chemistry/ccpn/ChangeLog
+++ b/sci-chemistry/ccpn/ChangeLog
@@ -1,6 +1,13 @@
# ChangeLog for sci-chemistry/ccpn
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.27 2010/04/25 11:29:20 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.28 2010/05/19 19:58:00 jlec Exp $
+
+*ccpn-2.1.3.1_p100519 (19 May 2010)
+
+ 19 May 2010; Justin Lecher <jlec@gentoo.org> -ccpn-2.1.3.1_p100406.ebuild,
+ -ccpn-2.1.3.1_p100409.ebuild, -ccpn-2.1.3.1_p100415.ebuild,
+ +ccpn-2.1.3.1_p100519.ebuild:
+ Todays Python patches
*ccpn-2.1.3.1_p100422 (22 Apr 2010)
diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100409.ebuild b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100409.ebuild
deleted file mode 100644
index bfff50587f50..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100409.ebuild
+++ /dev/null
@@ -1,186 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100409.ebuild,v 1.1 2010/04/09 06:09:40 jlec Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- x11-libs/libXext
- x11-libs/libX11
- opengl? ( virtual/glut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \
- -e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \
- -e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100415.ebuild b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100415.ebuild
deleted file mode 100644
index a0c3948c45d4..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100415.ebuild
+++ /dev/null
@@ -1,186 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100415.ebuild,v 1.1 2010/04/15 10:11:04 jlec Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- x11-libs/libXext
- x11-libs/libX11
- opengl? ( virtual/glut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \
- -e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \
- -e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100406.ebuild b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild
index 7801745a4d00..5f66f5a71e26 100644
--- a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100406.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100406.ebuild,v 1.2 2010/04/09 06:09:40 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild,v 1.1 2010/05/19 19:58:00 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2:2.5"