diff options
Diffstat (limited to 'sci-biology/biopython/files/biopython-1.47-kdtree.patch')
| -rw-r--r-- | sci-biology/biopython/files/biopython-1.47-kdtree.patch | 43 |
1 files changed, 0 insertions, 43 deletions
diff --git a/sci-biology/biopython/files/biopython-1.47-kdtree.patch b/sci-biology/biopython/files/biopython-1.47-kdtree.patch deleted file mode 100644 index 5d9563f2dc0c..000000000000 --- a/sci-biology/biopython/files/biopython-1.47-kdtree.patch +++ /dev/null @@ -1,43 +0,0 @@ ---- setup.py.old 2007-03-17 15:21:04.000000000 -0400 -+++ setup.py 2007-05-17 14:02:42.000000000 -0400 -@@ -64,6 +64,7 @@ - _CHECKED = check_dependencies() - return _CHECKED - -+USE_KDTREE = False - def check_dependencies(): - """Return whether the installation should continue.""" - # There should be some way for the user to tell specify not to -@@ -112,15 +113,8 @@ - - - # Compile KDTree ? Not compiled by default -- print "\n*** Bio.KDTree *** NOT built by default " -- kdtree_msg = """ --The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module, --which in turn, depends on C++ code that does not compile cleanly on --all platforms. Hence, Bio.KDTree is not built by default. -- --Would you like to build Bio.KDTree ?""" -- -- if get_yes_or_no (kdtree_msg, 0): -+ global USE_KDTREE -+ if USE_KDTREE: - NUMPY_PACKAGES.append("Bio.KDTree") - NUMPY_EXTENSIONS.append( - CplusplusExtension('Bio.KDTree._CKDTree', ---- Tests/test_KDTree.py.old 2008-07-05 16:32:25.000000000 -0400 -+++ Tests/test_KDTree.py 2008-07-05 16:41:33.000000000 -0400 -@@ -1,4 +1,11 @@ --from Bio.KDTree.KDTree import _neighbor_test, _test -+from Bio import MissingExternalDependencyError -+ -+try: -+ from Bio.KDTree.KDTree import _neighbor_test, _test -+except ImportError: -+ message = 'Could not import KDTree module ' \ -+ '(not important if you do not plan to use BIO.KDTree).' -+ raise MissingExternalDependencyError(message) - - nr_points=5000 - dim=3 |