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* sci-biology/infernal: Add patch as binary to prevent CVS magics, #431076Justin Lecher2014-07-061-8/+20
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/infernal: Add patch as binary to prevent CVS magics, #431076Justin Lecher2014-07-063-21/+34
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/abyss: Add missing dep on boost, #515156Justin Lecher2014-07-061-22/+2
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/abyss: Add missing dep on boost, #515156Justin Lecher2014-07-062-4/+8
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/ncbi-tools++ removal. This version doesn't build with gnutls-3. ↵Manuel Rüger2014-06-3010-1173/+0
| | | | See bug #421777.
* Convert to distutils-r1. Depend on setuptools.Mike Gilbert2014-06-301-7/+7
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key 0BBEEA1FEA4843A4)
* Convert to distutils-r1. Depend on setuptools.Mike Gilbert2014-06-303-22/+32
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key 0BBEEA1FEA4843A4)
* sci-biology/rebase: Version BUmp, fixes broken snapshot, #512286Justin Lecher2014-06-041-3/+25
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmp, fixes broken snapshot, #512286Justin Lecher2014-06-042-2/+8
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/biopython: Version Bump, thanks Martin Mokrejs ↵Justin Lecher2014-06-031-15/+17
| | | | | | <mmokrejs@fold.natur.cuni.cz> preparing the ebuild (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/biopython: Version Bump, thanks Martin Mokrejs ↵Justin Lecher2014-06-032-1/+54
| | | | | | <mmokrejs@fold.natur.cuni.cz> preparing the ebuild (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmp; clean oldJustin Lecher2014-06-026-194/+10
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmp; clean oldJustin Lecher2014-06-021-33/+3
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Add bedtools 2.20.1 thanks to Martin Mokrejs (bug #505538)Sven Vermeulen2014-05-301-4/+16
| | | | (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key 0x2EDD52403B68AF47)
* Add bedtools 2.20.1 thanks to Martin Mokrejs (bug #505538)Sven Vermeulen2014-05-302-1/+39
| | | | (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key 0x2EDD52403B68AF47)
* sci-biology/plink: Version BUmp, #510716Justin Lecher2014-05-191-7/+20
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/plink: Version BUmp, #510716Justin Lecher2014-05-193-34/+64
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/update-blastdb: Fix typoJustin Lecher2014-05-191-16/+16
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/update-blastdb: Fix typoJustin Lecher2014-05-192-3/+6
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/psipred: Add additional dep on sci-biology/update-blastJustin Lecher2014-05-141-21/+21
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/psipred: Add additional dep on sci-biology/update-blastJustin Lecher2014-05-147-18/+23
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/ncbi-tools++: Block sci-biology/update-blastdbJustin Lecher2014-05-141-7/+19
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/ncbi-tools++: Block sci-biology/update-blastdbJustin Lecher2014-05-142-4/+9
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/update-blastdb: New addition, written by meJustin Lecher2014-05-141-2/+24
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/update-blastdb: New addition, written by meJustin Lecher2014-05-144-0/+48
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Remove ruby18 target.Manuel Rüger2014-05-071-3/+3
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key )
* Remove ruby18 target.Manuel Rüger2014-05-073-8/+12
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key )
* sci-biology/biopython: Import changes from sci overlayJustin Lecher2014-05-071-14/+19
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/biopython: Import changes from sci overlayJustin Lecher2014-05-074-1/+100
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/profphd: Fix for newer perl, version BumpJustin Lecher2014-04-241-6/+21
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/profphd: Fix for newer perl, version BumpJustin Lecher2014-04-244-4/+67
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Fix LICENSE, add mirror and bindist restrictions, update SRC_URI, bug 470778.Ulrich Müller2014-04-171-7/+14
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key 9433907D693FB5B8!)
* Fix LICENSE, add mirror and bindist restrictions, update SRC_URI, bug 470778.Ulrich Müller2014-04-172-8/+11
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key 9433907D693FB5B8!)
* sci-biology/psipred: Version BumpJustin Lecher2014-04-071-14/+18
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/psipred: Version BumpJustin Lecher2014-04-072-2/+63
| | | | (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* New e-mail address.Jeroen Roovers2014-03-241-18/+6
| | | | (Portage version: 2.2.9-r1/cvs/Linux x86_64, signed Manifest commit with key A792A613)
* New e-mail address.Jeroen Roovers2014-03-242-3/+6
| | | | (Portage version: 2.2.9-r1/cvs/Linux x86_64, signed Manifest commit with key A792A613)
* sci-biology/samtools: Fix symlink creation, thanks Martin Mokrejs telling me ↵Justin Lecher2014-03-231-12/+2
| | | | | | that (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Fix symlink creation, thanks Martin Mokrejs telling me ↵Justin Lecher2014-03-232-3/+9
| | | | | | that (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2014-03-061-1/+25
| | | | (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2014-03-062-2/+53
| | | | (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/tophat: Version Bump, #502532; thanks José María Fernández ↵Justin Lecher2014-03-063-2/+164
| | | | | | González for the new ebuild (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/tophat: Version Bump, #502532; thanks José María Fernández ↵Justin Lecher2014-03-061-6/+21
| | | | | | González for the new ebuild (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Reference correct library name on Darwin, thanks Linlin Yan in bug #491812Fabian Groffen2014-02-111-17/+7
| | | | (Portage version: 2.2.8-prefix/cvs/SunOS i386, signed Manifest commit with key 0x5F75F607C5C74E89)
* Reference correct library name on Darwin, thanks Linlin Yan in bug #491812Fabian Groffen2014-02-112-7/+9
| | | | (Portage version: 2.2.8-prefix/cvs/SunOS i386, signed Manifest commit with key 0x5F75F607C5C74E89)
* Version bump of sci-biology/readseqJohann Schmitz2014-02-081-8/+10
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Version bump of sci-biology/readseqJohann Schmitz2014-02-082-1/+44
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Dropped unneeded patch files and dropped unneeded dependencies (bug #500488 ↵Johann Schmitz2014-02-081-11/+12
| | | | | | and #239161) (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Dropped unneeded patch files and dropped unneeded dependencies (bug #500488 ↵Johann Schmitz2014-02-087-329/+35
| | | | | | and #239161) (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Revision bump: EAPI 5, add subslot to Boost dependency, fix compatibility ↵Sergey Popov2014-02-051-7/+11
| | | | | | with Automake 1.14, wrt bug #499046. Drop old revision (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key 0x1F357D42)