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# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild,v 1.6 2005/11/28 12:02:35 mcummings Exp $
inherit perl-app eutils
DESCRIPTION="A collection of tools for bioinformatics, genomics and life science research: subset required to run analyses"
HOMEPAGE="http://www.bioperl.org/"
#SRC_URI="http://www.cpan.org/modules/by-module/Bio/${P}.tar.gz"
SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.gz"
LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS="x86"
IUSE=""
RDEPEND="
dev-perl/Algorithm-Diff
perl-core/File-Temp
dev-perl/IO-String
dev-perl/XML-Parser"
DEPEND=""
src_unpack() {
unpack ${A}
cd ${S}
# remove interactiveness
epatch ${FILESDIR}/bioperl-run-Pise-test-patch.diff
}
src_compile() {
# there's a test to run for BioGFFDB if using mysql
perl-module_src_compile || die "compile failed"
# make test
## perl-module_src_test || die "src test failed"
}
src_install() {
mydoc="AUTHORS BUGS FAQ"
perl-module_src_install
# bioperl scripts and examples
einfo 'Adding bioperl examples and scripts to /usr/share/...'
dodir /usr/share/${PF}/scripts
#insinto /usr/share/${PF}/scripts
cd ${S}/scripts/
tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
dodir /usr/share/${PF}/examples
cd ${S}/examples/
tar cf - ./ | ( cd ${D}/usr/share/${PF}/examples; tar xf -)
cd ${S}
}
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