added mpich-3.1.4 and openmpi-2.0.3 to the overlay

2 files changed, 289 insertions, 0 deletions

diff --git a/sys-cluster/mpich/mpich-3.1.4.ebuild b/sys-cluster/mpich/mpich-3.1.4.ebuild
new file mode 100644
index 0000000..7d9b892
--- /dev/null
+++ b/sys-cluster/mpich/mpich-3.1.4.ebuild
@@ -0,0 +1,114 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+FORTRAN_NEEDED=fortran
+
+inherit fortran-2 mpi-providers
+
+MY_PV=${PV/_/}
+DESCRIPTION="A high performance and portable MPI implementation"
+HOMEPAGE="http://www.mpich.org/"
+SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz"
+
+LICENSE="mpich"
+KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+cxx doc fortran mpi-threads romio threads"
+
+COMMON_DEPEND="
+	dev-libs/libaio
+	>=sys-apps/hwloc-1.9
+	romio? ( net-fs/nfs-utils )"
+
+DEPEND="${COMMON_DEPEND}
+	dev-lang/perl
+	sys-devel/libtool"
+
+RDEPEND="${COMMON_DEPEND}
+	!sys-cluster/mpich2
+	!sys-cluster/openmpi"
+
+S="${WORKDIR}"/${PN}-${MY_PV}
+
+pkg_setup() {
+	FORTRAN_STANDARD="77 90"
+	fortran-2_pkg_setup
+
+	if use mpi-threads && ! use threads; then
+		ewarn "mpi-threads requires threads, assuming that's what you want"
+	fi
+}
+
+src_prepare() {
+	# Using MPICHLIB_LDFLAGS doesn't seem to fully work.
+	sed -i 's| *@WRAPPER_LDFLAGS@ *||' \
+		src/packaging/pkgconfig/mpich.pc.in \
+		src/env/*.in \
+		|| die
+}
+
+src_configure() {
+	local c="--enable-shared"
+	local hydra_c="--with-hwloc-prefix=/usr"
+
+	# The configure statements can be somewhat confusing, as they
+	# don't all show up in the top level configure, however, they
+	# are picked up in the children directories.  Hence the separate
+	# local vars.
+
+	if use mpi-threads; then
+		# MPI-THREAD requries threading.
+		c="${c} --with-thread-package=pthreads"
+		c="${c} --enable-threads=runtime"
+	else
+		if use threads ; then
+			c="${c} --with-thread-package=pthreads"
+		else
+			c="${c} --with-thread-package=none"
+		fi
+		c="${c} --enable-threads=single"
+	fi
+
+	c="${c} --sysconfdir=${EPREFIX}/etc/${PN}"
+	c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}"
+
+	export MPICHLIB_CFLAGS=${CFLAGS}
+	export MPICHLIB_CPPFLAGS=${CPPFLAGS}
+	export MPICHLIB_CXXFLAGS=${CXXFLAGS}
+	export MPICHLIB_FFLAGS=${FFLAGS}
+	export MPICHLIB_FCFLAGS=${FCFLAGS}
+	export MPICHLIB_LDFLAGS=${LDFLAGS}
+	unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS
+
+	econf ${c} \
+		--syconfdir="$(mpi-providers_sysconfdir)" \
+		--with-pm=hydra \
+		--disable-fast \
+		--enable-versioning \
+		${hydra_c}
+		$(use_enable romio) \
+		$(use_enable cxx) \
+		$(use_enable fortran f77) \
+		$(use_enable fortran fc)
+}
+
+src_test() {
+	emake -j1 check
+}
+
+src_install() {
+	default
+
+	dodir /usr/share/doc/${PF}
+	dodoc README{,.envvar} CHANGES RELEASE_NOTES
+	newdoc src/pm/hydra/README README.hydra
+	if use romio; then
+		newdoc src/mpi/romio/README README.romio
+	fi
+
+	if ! use doc; then
+		rm -rf "${D}"usr/share/doc/${PF}/www*
+	fi
+	mpi-providers_safe_mv
+}
diff --git a/sys-cluster/openmpi/openmpi-2.0.3.ebuild b/sys-cluster/openmpi/openmpi-2.0.3.ebuild
new file mode 100644
index 0000000..90392d3
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-2.0.3.ebuild
@@ -0,0 +1,175 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi-providers
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+	openmpi_fabrics_ofed
+	openmpi_fabrics_knem
+	openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+	openmpi_rm_pbs
+	openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+	openmpi_ofed_features_control-hdr-padding
+	openmpi_ofed_features_connectx-xrc
+	openmpi_ofed_features_udcm
+	openmpi_ofed_features_rdmacm
+	openmpi_ofed_features_dynamic-sl
+	openmpi_ofed_features_failover"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="http://www.open-mpi.org"
+SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux"
+IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads
+	${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+	openmpi_rm_pbs? ( !openmpi_rm_slurm )
+	openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )"
+
+# dev-util/nvidia-cuda-toolkit is always multilib
+CDEPEND="
+	!sys-cluster/mpich
+	!sys-cluster/mpich2
+	!sys-cluster/nullmpi
+	!sys-cluster/mpiexec
+	>=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads]
+	dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+	>=sys-apps/hwloc-1.11.2[${MULTILIB_USEDEP},numa?]
+	>=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 )
+	elibc_FreeBSD? ( dev-libs/libexecinfo )
+	openmpi_fabrics_ofed? ( sys-fabric/ofed:* )
+	openmpi_fabrics_knem? ( sys-cluster/knem )
+	openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+	openmpi_rm_pbs? ( sys-cluster/torque )
+	openmpi_rm_slurm? ( sys-cluster/slurm )
+	openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )"
+
+RDEPEND="${CDEPEND}
+	java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+	java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+	/usr/include/mpi.h
+	/usr/include/openmpi/ompi/mpi/java/mpiJava.h
+)
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	java-pkg-opt-2_pkg_setup
+
+	elog
+	elog "OpenMPI has an overwhelming count of configuration options."
+	elog "Don't forget the EXTRA_ECONF environment variable can let you"
+	elog "specify configure options if you find them necessary."
+	elog
+}
+
+src_prepare() {
+	default
+
+	# Necessary for scalibility, see
+	# http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+	if use threads; then
+		echo 'oob_tcp_listen_mode = listen_thread' \
+			>> opal/etc/openmpi-mca-params.conf || die
+	fi
+}
+
+multilib_src_configure() {
+	if use java; then
+		# We must always build with the right -source and -target
+		# flags. Passing flags to javac isn't explicitly supported here
+		# but we can cheat by overriding the configure test for javac.
+		export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+	fi
+
+	ECONF_SOURCE=${S} econf \
+		--sysconfdir="$(mpi-providers_sysconfdir)" \
+		--enable-pretty-print-stacktrace \
+		--enable-orterun-prefix-by-default \
+		--with-hwloc="${EPREFIX}/usr" \
+		--with-libltdl="${EPREFIX}/usr" \
+		--with-libevent="${EPREFIX}/usr" \
+		--enable-mpi-fortran=$(usex fortran all no) \
+		$(use_enable cxx mpi-cxx) \
+		$(use_with cma) \
+		$(use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+		$(use_enable romio io-romio) \
+		$(use_enable heterogeneous) \
+		$(use_enable ipv6) \
+		$(multilib_native_use_enable java) \
+		$(multilib_native_use_enable java mpi-java) \
+		$(multilib_native_use_enable mpi-threads mpi-thread-multiple) \
+		$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+		$(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+		$(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \
+		$(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+		$(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \
+		$(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+		$(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \
+		$(multilib_native_use_with openmpi_rm_pbs tm) \
+		$(multilib_native_use_with openmpi_rm_slurm slurm)
+}
+
+multilib_src_test() {
+	# Doesn't work with the default src_test as the dry run (-n) fails.
+	emake -j1 check
+}
+
+multilib_src_install() {
+	default
+
+	# fortran header cannot be wrapped (bug #540508), workaround part 1
+	if multilib_is_native_abi && use fortran; then
+		mkdir "${T}"/fortran || die
+		mv "${ED}"usr/include/mpif* "${T}"/fortran || die
+	else
+		# some fortran files get installed unconditionally
+		rm "${ED}"usr/include/mpif* "${ED}"usr/bin/mpif* || die
+	fi
+}
+
+multilib_src_install_all() {
+	# fortran header cannot be wrapped (bug #540508), workaround part 2
+	if use fortran; then
+		mv "${T}"/fortran/mpif* "${ED}"usr/include || die
+	fi
+
+	# Remove la files, no static libs are installed and we have pkg-config
+	find "${ED}" -name '*.la' -delete || die
+
+	if use java; then
+		local mpi_jar="${ED}"usr/$(get_libdir)/mpi.jar
+		java-pkg_dojar "${mpi_jar}"
+		# We don't want to install the jar file twice
+		# so let's clean after ourselves.
+		rm "${mpi_jar}" || die
+	fi
+
+	einstalldocs
+	mpi-providers_safe_mv
+}