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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-07-29 22:44:32 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-07-29 22:44:32 +0200 |
| commit | 0f0dfd5089d75186aff4f1e557eabedfcf0930e8 (patch) | |
| tree | 82fa824d694e496e4825cb3adc79321f2c9f3e81 /dev-perl | |
| parent | sci-biology/twinscan: do not install test.pl, keep track of file collision (diff) | |
| download | sci-0f0dfd5089d75186aff4f1e557eabedfcf0930e8.tar.gz sci-0f0dfd5089d75186aff4f1e557eabedfcf0930e8.tar.bz2 sci-0f0dfd5089d75186aff4f1e557eabedfcf0930e8.zip | |
dev-perl/Bio-DB-HTS: new package, needs more fixes
Package-Manager: portage-2.3.0
Diffstat (limited to 'dev-perl')
| -rw-r--r-- | dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild | 28 | ||||
| -rw-r--r-- | dev-perl/Bio-DB-HTS/Manifest | 1 | ||||
| -rw-r--r-- | dev-perl/Bio-DB-HTS/metadata.xml | 12 |
3 files changed, 41 insertions, 0 deletions
diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild new file mode 100644 index 000000000..d450118bc --- /dev/null +++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +MODULE_AUTHOR="RISHIDEV" +inherit perl-module multilib toolchain-funcs + +DESCRIPTION="Enable rapid access to bgzipped FASTA files" + +#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" +SLOT="0" +KEYWORDS="" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND} + dev-perl/Module-Build + sci-libs/htslib" + +SRC_TEST="do" + +src_prepare(){ + # https://github.com/Ensembl/Bio-HTS/issues/15 + # https://github.com/Ensembl/Bio-HTS/issues/30 + HTSLIB_LIBDIR="${EPREFIX}"/"$(get_libdir)" HTSLIB_INCDIR="/usr/include/htslib" perl-module_src_prepare +} diff --git a/dev-perl/Bio-DB-HTS/Manifest b/dev-perl/Bio-DB-HTS/Manifest new file mode 100644 index 000000000..dd9ad00f3 --- /dev/null +++ b/dev-perl/Bio-DB-HTS/Manifest @@ -0,0 +1 @@ +DIST Bio-DB-HTS-2.3.tar.gz 2187131 SHA256 0d441d7adf46ec11a99b022a9542ad686ca1d442a969e29fc677fa9e50622079 SHA512 837da08534fab6f16f889068cfd67e9bb051b592307c47503c707fb263690e952e4292473bfee54664b109312f8188bd2b6726a7669980f6d129ddd6042be8ed WHIRLPOOL 722dd9558801b7f8bc2f31064a4082fd89f53d7aa3ba22a7e7da248ef5afe93645022545a1aa22fc7b0eeb2eaee3fbc8e8b2960dc7de017deebfaa5a7f7d29eb diff --git a/dev-perl/Bio-DB-HTS/metadata.xml b/dev-perl/Bio-DB-HTS/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/dev-perl/Bio-DB-HTS/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |