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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-05-02 00:13:29 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-05-02 00:13:29 +0200 |
| commit | 39d413c0adc6a8d96442cc9562c516c53021add8 (patch) | |
| tree | 441b845da7d3a09f1b586e54b551c52840299863 /sci-biology/jellyfish | |
| parent | sci-libs/tensorflow: Fix the C++ header find (diff) | |
| download | sci-39d413c0adc6a8d96442cc9562c516c53021add8.tar.gz sci-39d413c0adc6a8d96442cc9562c516c53021add8.tar.bz2 sci-39d413c0adc6a8d96442cc9562c516c53021add8.zip | |
sci-biology/jellyfish: version bump and a few tweaks
Install properly PDF documentation.
Use ${PV} in SRC_URI.
Update SRC_URI to reflect github hosting these days.
Package-Manager: Portage-2.3.31, Repoman-2.3.9
Diffstat (limited to 'sci-biology/jellyfish')
| -rw-r--r-- | sci-biology/jellyfish/Manifest | 5 | ||||
| -rw-r--r-- | sci-biology/jellyfish/jellyfish-1.1.12.ebuild (renamed from sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild) | 4 | ||||
| -rw-r--r-- | sci-biology/jellyfish/jellyfish-2.2.10.ebuild (renamed from sci-biology/jellyfish/jellyfish-2.2.9.ebuild) | 0 |
3 files changed, 4 insertions, 5 deletions
diff --git a/sci-biology/jellyfish/Manifest b/sci-biology/jellyfish/Manifest index 010ec694d..40acba1ff 100644 --- a/sci-biology/jellyfish/Manifest +++ b/sci-biology/jellyfish/Manifest @@ -1,7 +1,6 @@ DIST JellyfishUserGuide.pdf 142367 BLAKE2B 371d04c920a6e4d25ba74238c5262a9f8c182645b73468d0bed9f519da25d8c886cb9895a8e9334169caa247ebe9f8aa4738ed2e8d7d14cd5ecfb35ede7403a8 SHA512 a9d65be7591d4b9b275b9f76ab79806d31bf7ef36b297b67b1802a302687aa8d49d4c491c3bb9201aec58268bcfc8c703940c72991b9080bbd1bde95bbda5b8a -DIST jellyfish-1.1.11.tar.gz 1067138 BLAKE2B cda369674a939f0abda1c0ce12dbb170d679a2dfc1bb7f4da9dc3c1c0f1f1f3077bf1876f9a2ef045866c3c8bb960616641d2d46f821d861551a980f359f0465 SHA512 aea7373e5ffb9deba7e164425bd7d4219d9be1e48ca666ff41e70bbc77026bc581273fb5a07c47894e2b31dd1339d4f1bc1a7b0501f10a482353ecde082eed1a +DIST jellyfish-1.1.12.tar.gz 1097948 BLAKE2B c1394527c0645d1ac14045691d0c7defc080dbdc2d33c64cb12462d0f3e4c08bd5e65e4f8276741e67595b6d942b211a088ed4981fb419fffb5afbed9316dc11 SHA512 95739117a9090f6338c388ee3b4a3d2a3df32f1311d11f1b23fabd873efed19f7beaf2da1385c0fd78ada3684bf8c7282608292c642f5f35e201676fb87953bf DIST jellyfish-2.1.3.tar.gz 955773 BLAKE2B f01891238aa819ddeb2ca3b45276f23fe209cb0015bc5874adbed6355bce44ab23c19020fd5a10779a93c29ca3d241e36fe72fb5b4ffee4a37b954980cb6b217 SHA512 2b6fea6c2686de7b568988543d5a9466676eb17252ecce3243b0dc7e3c833aed02ae6570749df58c2921289db0167b39848ccd80eb3cc568cdbaa0045114b702 DIST jellyfish-2.1.4.tar.gz 958038 BLAKE2B 8cb3fa50858f8cc4fbb3e5e9c64f76e2d3ff4453767411a36fab1188673cbfd12f52270ee7f4269c606931f34e9805c878a05c6dcd3370b7b0de65f25ad7a1fb SHA512 28bbaf6ed5c69caec24a09ceb2dfa99b160f3a9c2764d3f30ab205374a6f17dfc5c6d7405e75fd5161882350db160442a91568dd65ea9851e8cb74eb71f25742 +DIST jellyfish-2.2.10.tar.gz 1123173 BLAKE2B 9a30d4dce8189b199842abe9ffd1efba7a60240786898deb38af6b67365311eff38d60c886c4c290747d413e4a03a9bbb0060282b12025fa81e507533f062bb7 SHA512 241f151981c840f8c68b39465d19db2c2199183908e7de337ccb1bf0fb107a088c2ea116f8a023ca6eab338a6a63c46d6b7915ce508577d8a5bc1d5537f8de19 DIST jellyfish-2.2.6.tar.gz 1082535 BLAKE2B 8ad044c470245132c843f93c639f9c0e502bcf41031a7a561b9c2bbfb46763d91651de5af51bf9d42bf560dbb7de9be5595aa00b9cf3a060db731a5087494780 SHA512 c3320facbbad1c6f2aede2edd7d2574bbff0e5a7f655d8b0224e511f07a319c4682adc1576a189367a546011c43d79f7b01474580dcc9c44f8e087397b475056 -DIST jellyfish-2.2.9.tar.gz 1146617 BLAKE2B 2c63ca99c86c6687f8300c746a248348dad2aaead01953fe6f4856e1e032a6985123b4a958bfc77af238280dc840bf35ce19852834cc620628e88a4ecc48356f SHA512 9da8259183d7b85940fdc3d8c6da8bcd11a8434dbd9b0d5344315b2803ef4e585eaa27fbcf38dcf699477c798e70b1e42fc4cf3226527c5e37eba65d80fd9623 -DIST jellyfish-manual-1.1.pdf 241464 BLAKE2B b33e6784674cb4a296b45c7799db9b1b9e0e01687093f236fe30fd34c56f71afd796b9f8fa30857918c9d49e767e527425fa0b09eb9195705ac85a6e314523eb SHA512 b697c51af5bd85b779fea4f03772ac8e21713f906773350931a7d67adecb4268b051e766173122ad2ba9d168235f534ff6eaa070496d6318cf8a76c8690ab61c diff --git a/sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild b/sci-biology/jellyfish/jellyfish-1.1.12.ebuild index a9b0ce4d1..a22be5187 100644 --- a/sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild +++ b/sci-biology/jellyfish/jellyfish-1.1.12.ebuild @@ -7,8 +7,7 @@ inherit eutils flag-o-matic DESCRIPTION="k-mer counter within reads for assemblies" HOMEPAGE="http://www.cbcb.umd.edu/software/jellyfish" -SRC_URI="http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz - http://www.cbcb.umd.edu/software/jellyfish/jellyfish-manual-1.1.pdf" +SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz" # older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 # also was bundled in quorum-0.2.1 and MaSuRca-2.1.0 @@ -45,4 +44,5 @@ src_install(){ mv "${ED}"/usr/include/"${P}"/"${PN}"/* "${ED}/usr/include/${PN}${SLOT}/" || die rm -r "${ED}/usr/include/${P}" || die mv "${ED}"/usr/share/man/man1/jellyfish.1 "${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die + newdoc doc/jellyfish.pdf jellyfish"${SLOT}".pdf } diff --git a/sci-biology/jellyfish/jellyfish-2.2.9.ebuild b/sci-biology/jellyfish/jellyfish-2.2.10.ebuild index 692c9e9ee..692c9e9ee 100644 --- a/sci-biology/jellyfish/jellyfish-2.2.9.ebuild +++ b/sci-biology/jellyfish/jellyfish-2.2.10.ebuild |