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| author |   David Seifert <soap@gentoo.org> | 2021-04-05 16:14:35 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2021-04-05 16:14:35 +0200 |
| commit | 2cb7d9aa5e80e00466947ae42c87844d2aea4fba (patch) | |
| tree | e07062e4598f996d9659ad0db5e9d01c0d5be01b /sci-biology | |
| parent | sci-biology/repeatmasker-libraries: Port to EAPI 7 (diff) | |
| download | gentoo-2cb7d9aa5e80e00466947ae42c87844d2aea4fba.tar.gz gentoo-2cb7d9aa5e80e00466947ae42c87844d2aea4fba.tar.bz2 gentoo-2cb7d9aa5e80e00466947ae42c87844d2aea4fba.zip | |
sci-biology/sibsim4: Port to EAPI 7
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch | 26 | ||||
| -rw-r--r-- | sci-biology/sibsim4/sibsim4-0.20.ebuild | 19 |
2 files changed, 31 insertions, 14 deletions
diff --git a/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch b/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch new file mode 100644 index 000000000000..6436747e3dd9 --- /dev/null +++ b/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch @@ -0,0 +1,26 @@ +--- a/Makefile ++++ b/Makefile +@@ -21,13 +21,12 @@ + # to change it to this: + # CFLAGS = -Xc + +-CFLAGS = -std=gnu99 -W -Wall -Wconversion -pedantic $(DEBUG) $(OPT) ++CFLAGS += -std=gnu99 -Wall -Wconversion -pedantic + + + # The default is GCC. On Solaris, you might put: + # CC = /opt/SUNWspro/bin/cc + +-CC = gcc + + + # Depending on the compile flags you use, you might need to explicitly use the +@@ -42,7 +41,7 @@ + OBJS = sim4b1.o align.o misc.o sim4.init.o + + sim4: $(OBJS) +- $(CC) -o SIBsim4 $(CFLAGS) $(OBJS) $(LIBS) ++ $(CC) $(CFLAGS) $(LDFLAGS) -o SIBsim4 $(OBJS) $(LIBS) + + clean: + rm -f SIBsim4 *.o diff --git a/sci-biology/sibsim4/sibsim4-0.20.ebuild b/sci-biology/sibsim4/sibsim4-0.20.ebuild index bf431c666920..679cb462e045 100644 --- a/sci-biology/sibsim4/sibsim4-0.20.ebuild +++ b/sci-biology/sibsim4/sibsim4-0.20.ebuild @@ -1,31 +1,22 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit toolchain-funcs DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner" HOMEPAGE="http://sibsim4.sourceforge.net/" SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz" +S="${WORKDIR}/SIBsim4-${PV}" LICENSE="GPL-2" SLOT="0" -IUSE="" KEYWORDS="amd64 x86" -DEPEND="" -RDEPEND="" - -S="${WORKDIR}/SIBsim4-${PV}" +PATCHES=( "${FILESDIR}"/${P}-makefile.patch ) -src_prepare() { - sed \ - -e 's/CFLAGS = /CFLAGS +=/' \ - -e '/^CC/s:=:?=:' \ - -e '/^OPT/d' \ - -e "s:-o:${LDFLAGS} -o:g" \ - -i "${S}/Makefile" || die +src_configure() { tc-export CC } |