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| author |   David Seifert <soap@gentoo.org> | 2020-08-22 14:06:34 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2020-08-22 14:06:34 +0200 |
| commit | 422ca7a3d7fbb0f7e0a63a4f19934281226dcc49 (patch) | |
| tree | dc7f19aed960e19ede2589005bd7f06a9ca0ef68 /sci-biology | |
| parent | profiles/package.mask: masked media-libs/slv2 for removal (diff) | |
| download | gentoo-422ca7a3d7fbb0f7e0a63a4f19934281226dcc49.tar.gz gentoo-422ca7a3d7fbb0f7e0a63a4f19934281226dcc49.tar.bz2 gentoo-422ca7a3d7fbb0f7e0a63a4f19934281226dcc49.zip | |
sci-biology/biopython: Remove old 1.73
Package-Manager: Portage-3.0.4, Repoman-3.0.1
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biopython/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.73.ebuild | 57 |
2 files changed, 0 insertions, 58 deletions
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index cff73fbcbc32..420f6d1f83d8 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,2 +1 @@ -DIST biopython-1.73.tar.gz 15715102 BLAKE2B b2c40f9ed02681f19607c88f91b469784985acefc6e81770a54e5c13c715915344bc7fd72e4a88ae50879a2463965ac6d0d04c6d263908887028d1e065620b95 SHA512 d067330ef8e25ca6881b56f4e5e89e16a816c89760473e2f32a6236ab202f805294650aa944f0b098987425bcb65727317da7a26deb4d4937f02b00123ea9a8f DIST biopython-1.77.tar.gz 16837021 BLAKE2B b5586f0ea3e476b11801dcc98039d5eea7b191e11d390192c0cf348018ded005fe2ad5dc9ba71c83aebc9cdde20c97244905dcc3aeb5436a97588da9f8c79c3e SHA512 6f4b03d46c591e1f49dd1e76bcc4ac5c9aaa2bf748c9dd37ffc5de5a613fbeed38f89b418c01601dd99c65b13b2e294bc8d81ffafc42a9ff1b309c84f840d0d5 diff --git a/sci-biology/biopython/biopython-1.73.ebuild b/sci-biology/biopython/biopython-1.73.ebuild deleted file mode 100644 index 94acdfc2a2cb..000000000000 --- a/sci-biology/biopython/biopython-1.73.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{6,7} ) -inherit distutils-r1 eutils - -DESCRIPTION="Python modules for computational molecular biology" -HOMEPAGE="https://www.biopython.org/ https://pypi.org/project/biopython/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="HPND" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND=" - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/rdflib[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - >=dev-python/reportlab-3.5.13-r1[${PYTHON_USEDEP}] - dev-python/pydot[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}] - sys-devel/flex" - -DOCS=( {CONTRIB,DEPRECATED,NEWS,README}.rst Doc/. ) - -python_test() { - distutils_install_for_testing - cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die - cd "${TEST_DIR}"/lib/Tests || die - rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die - "${EPYTHON}" run_tests.py --offline --verbose || die -} - -python_install_all() { - # remove files causing ecompressdir to fail - rm Doc/examples/ls_orchid.gbk.{gz,bz2} || die - - distutils-r1_python_install_all - - dodir /usr/share/${PN} - cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die -} - -pkg_postinst() { - elog "For database support you need to install:" - optfeature "MySQL" dev-python/mysql-python - optfeature "PostgreSQL" dev-python/psycopg - - elog "Some applications need extra packages:" - optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss -} |