sci-biology/fasta: drop 36.3.5e

Closes: https://bugs.gentoo.org/648618
Closes: https://bugs.gentoo.org/828700
Signed-off-by: David Seifert <soap@gentoo.org>

3 files changed, 0 insertions, 154 deletions

diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest
index cff190468270..c0bd97106d3a 100644
--- a/sci-biology/fasta/Manifest
+++ b/sci-biology/fasta/Manifest
@@ -1,2 +1 @@
-DIST fasta-36.3.5e.tar.gz 943763 BLAKE2B 6234d0aee76af6614e6d25ebcfbdfae080db5bc5adf611aeb6edc53ed7c6cb6cef257bf852ed39bc286527cec4175c251765ce23ea5ff39d12ff8947dba97ac6 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812
 DIST fasta-36.3.8h.tar.gz 1257682 BLAKE2B e6bd9087563150355fed6edf52a24a0b31ef0658b1e95c3df6d5b5711fc4d137ddd773fb8b3b2fa82fe3f5c310689b2f89668f5b51654eed41ed71f9ef140f99 SHA512 30d160ad083a605397c6c35d2b28f6064cd96f51f99b3664b424ec1dbbbd09772c72e89731a7257306ab58c4ad4b877e229873abd0e09407c64fae643bc04391
diff --git a/sci-biology/fasta/fasta-36.3.5e.ebuild b/sci-biology/fasta/fasta-36.3.5e.ebuild
deleted file mode 100644
index c4c94d0e7f21..000000000000
--- a/sci-biology/fasta/fasta-36.3.5e.ebuild
+++ /dev/null
@@ -1,79 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit epatch flag-o-matic toolchain-funcs
-
-DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package"
-HOMEPAGE="https://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml"
-SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}36/${P}.tar.gz"
-
-LICENSE="fasta"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="debug cpu_flags_x86_sse2 test"
-RESTRICT="!test? ( test )"
-
-DEPEND="test? ( app-shells/tcsh )"
-RDEPEND=""
-
-src_prepare() {
-	CC_ALT=
-	CFLAGS_ALT=
-	ALT=
-
-	use debug && append-flags -DDEBUG
-
-	if [[ $(tc-getCC) == *icc* ]]; then
-		CC_ALT=icc
-		ALT="${ALT}_icc"
-	else
-		CC_ALT=$(tc-getCC)
-		use x86 && ALT="32"
-		use amd64 && ALT="64"
-	fi
-
-	if use cpu_flags_x86_sse2 ; then
-		ALT="${ALT}_sse2"
-		append-flags -msse2
-		[[ $(tc-getCC) == *icc* ]] || append-flags -ffast-math
-	fi
-
-	export CC_ALT="${CC_ALT}"
-	export ALT="${ALT}"
-
-	epatch "${FILESDIR}"/${P}-ldflags.patch
-
-	sed \
-		-e 's:-ffast-math::g' \
-		-i make/Makefile* || die
-
-}
-
-src_compile() {
-	cd src || die
-	emake -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all
-}
-
-src_test() {
-	cd test || die
-	FASTLIBS="../conf" bash test.sh || die
-}
-
-src_install() {
-	local bin
-	dobin bin/*
-
-	pushd bin > /dev/null || die
-	for bin in *36; do
-		dosym ${bin} /usr/bin/${bin%36}
-	done
-	popd
-
-	insinto /usr/share/${PN}
-	doins -r conf/* data seq
-
-	doman doc/{prss3.1,fasta36.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1}
-	dodoc  FASTA_LIST README doc/{README.versions,readme*,fasta*,changes*}
-}
diff --git a/sci-biology/fasta/files/fasta-36.3.5e-ldflags.patch b/sci-biology/fasta/files/fasta-36.3.5e-ldflags.patch
deleted file mode 100644
index a6eeabfdf46c..000000000000
--- a/sci-biology/fasta/files/fasta-36.3.5e-ldflags.patch
+++ /dev/null
@@ -1,74 +0,0 @@
- make/Makefile.pcom   | 8 ++++----
- make/Makefile.pcom_s | 8 ++++----
- make/Makefile.pcom_t | 8 ++++----
- 3 files changed, 12 insertions(+), 12 deletions(-)
-
-diff --git a/make/Makefile.pcom b/make/Makefile.pcom
-index 9c5f801..33fc001 100644
---- a/make/Makefile.pcom
-+++ b/make/Makefile.pcom
-@@ -209,14 +209,14 @@ print_pssm : print_pssm.c getseq.c karlin.c apam.c
- 	$(CC) -o print_pssm $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c $(LIB_M)
- 
- map_db : map_db.c uascii.h ncbl2_head.h
--	$(CC) $(CFLAGS) -o $(BIN)/map_db map_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/map_db map_db.c
- 
- list_db : list_db.c
--	$(CC) $(CFLAGS) -o $(BIN)/list_db list_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/list_db list_db.c
- 
- 
- lav2ps : lav2plt.o lavplt_ps.o
--	$(CC) -DUNIX -o $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
- 
- lav2svg : lav2plt.o lavplt_svg.o
--	$(CC) -DUNIX -o $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm
-diff --git a/make/Makefile.pcom_s b/make/Makefile.pcom_s
-index dc53001..8a45044 100644
---- a/make/Makefile.pcom_s
-+++ b/make/Makefile.pcom_s
-@@ -143,14 +143,14 @@ print_pssm : print_pssm.c getseq.c karlin.c apam.c
- 	$(CC) -o print_pssm $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c $(LIB_M)
- 
- map_db : map_db.c uascii.h ncbl2_head.h
--	$(CC) $(CFLAGS) -o $(BIN)/map_db map_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/map_db map_db.c
- 
- list_db : list_db.c
--	$(CC) $(CFLAGS) -o $(BIN)/list_db list_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/list_db list_db.c
- 
- 
- lav2ps : lav2plt.o lavplt_ps.o
--	$(CC) -DUNIX -o $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
- 
- lav2svg : lav2plt.o lavplt_svg.o
--	$(CC) -DUNIX -o $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm
-diff --git a/make/Makefile.pcom_t b/make/Makefile.pcom_t
-index 8a71438..5b08a50 100644
---- a/make/Makefile.pcom_t
-+++ b/make/Makefile.pcom_t
-@@ -164,14 +164,14 @@ print_pssm : print_pssm.c getseq.c karlin.c apam.c
- 	$(CC) -o print_pssm $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c $(LIB_M)
- 
- map_db : map_db.c uascii.h ncbl2_head.h
--	$(CC) $(CFLAGS) -o $(BIN)/map_db map_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/map_db map_db.c
- 
- list_db : list_db.c
--	$(CC) $(CFLAGS) -o $(BIN)/list_db list_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/list_db list_db.c
- 
- 
- lav2ps : lav2plt.o lavplt_ps.o
--	$(CC) -DUNIX -o $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
- 
- lav2svg : lav2plt.o lavplt_svg.o
--	$(CC) -DUNIX -o $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm