proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 60 insertions, 0 deletions

diff --git a/sci-chemistry/suitename/Manifest b/sci-chemistry/suitename/Manifest
new file mode 100644
index 000000000000..eac0c677a2bb
--- /dev/null
+++ b/sci-chemistry/suitename/Manifest
@@ -0,0 +1 @@
+DIST suitename.0.3.070628.src.tgz 29914 SHA256 5c2a709aa2d815b259475344aa2b982c157868eb9a7e5d6407b8f525f7e28c4c
diff --git a/sci-chemistry/suitename/metadata.xml b/sci-chemistry/suitename/metadata.xml
new file mode 100644
index 000000000000..06ac91e5fb9e
--- /dev/null
+++ b/sci-chemistry/suitename/metadata.xml
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-chemistry</herd>
+	<maintainer>
+		<email>jlec@gentoo.org</email>
+	</maintainer>
+	<longdescription>
+Suitename is a new C program that supports the ROC RNA Ontology Consortium 
+consensus RNA backbone nomenclature and conformer-list development (see our RNA 
+backbone rotamer section.
+From dihedral-angle input for a specific RNA structure (usually from Dangle), 
+Suitename categorizes the RNA backbone geometry of each suite (the 
+sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging
+to one of the 53 defined conformer bins. The output is either a 
+one-line-per-suite report, or a linear conformer string (as shown below the 
+image here) in one of several variant formats. Suitename is built into 
+MolProbity, producing entries in the multi-criterion chart for an RNA model and 
+also a suitestring file. The Suitename code is made available here for bulk or 
+individual command-line use.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/suitename/suitename-0.3.070628.ebuild b/sci-chemistry/suitename/suitename-0.3.070628.ebuild
new file mode 100644
index 000000000000..fb11e075c8d6
--- /dev/null
+++ b/sci-chemistry/suitename/suitename-0.3.070628.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+inherit toolchain-funcs
+
+MY_P="${PN}.${PV}"
+
+DESCRIPTION="The ROC RNA Ontology Consortium consensus RNA backbone nomenclature and conformer-list development"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/suitename.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="richardson"
+IUSE=""
+
+S="${WORKDIR}"/${MY_P}
+
+src_prepare() {
+	tc-export CC
+	cp Makefile.linux Makefile || die
+	sed \
+		-e 's:cc:${CC}:g' \
+		-e "s:-o:${LDFLAGS} -o:g" \
+		-i Makefile || die
+}
+
+src_compile() {
+	emake CFLAGS="${CFLAGS}"
+}
+
+src_install() {
+	dobin ${PN}
+}