sci-libs/vtk: Drop old

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>

24 files changed, 0 insertions, 1058 deletions

diff --git a/sci-libs/vtk/files/vtk-5.10.1-ffmpeg-1.patch b/sci-libs/vtk/files/vtk-5.10.1-ffmpeg-1.patch
deleted file mode 100644
index 2cefb12591a5..000000000000
--- a/sci-libs/vtk/files/vtk-5.10.1-ffmpeg-1.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-https://bugs.gentoo.org/show_bug.cgi?id=450464
-
-Index: VTK5.10.1/IO/vtkFFMPEGWriter.cxx
-===================================================================
---- VTK5.10.1.orig/IO/vtkFFMPEGWriter.cxx
-+++ VTK5.10.1/IO/vtkFFMPEGWriter.cxx
-@@ -192,13 +192,6 @@ int vtkFFMPEGWriterInternal::Start()
-     c->bit_rate_tolerance = this->Writer->GetBitRateTolerance();
-     }
- 
--  //apply the chosen parameters
--  if (av_set_parameters(this->avFormatContext, NULL) < 0)
--    {
--    vtkGenericWarningMacro (<< "Invalid output format parameters." );
--    return 0;
--    }
--
-   //manufacture a codec with the chosen parameters
-   AVCodec *codec = avcodec_find_encoder(c->codec_id);
-   if (!codec) 
-@@ -259,14 +252,17 @@ int vtkFFMPEGWriterInternal::Start()
- 
- 
-   //Finally, open the file and start it off.
--  if (url_fopen(&this->avFormatContext->pb, this->avFormatContext->filename, URL_WRONLY) < 0) 
-+  if (avio_open(&this->avFormatContext->pb, this->avFormatContext->filename, AVIO_FLAG_WRITE) < 0) 
-     {
-     vtkGenericWarningMacro (<< "Could not open " << this->Writer->GetFileName() << "." );
-     return 0;
-     }
-   this->openedFile = 1;
- 
--  av_write_header(this->avFormatContext);
-+  if(avformat_write_header(this->avFormatContext, NULL) < 0) {
-+    vtkGenericWarningMacro (<< "Failed to write header." );
-+    return 0;
-+  }
-   return 1;
- }
- 
-@@ -391,7 +387,7 @@ void vtkFFMPEGWriterInternal::End()
- #ifdef VTK_FFMPEG_OLD_URL_FCLOSE
-       url_fclose(&this->avFormatContext->pb);
- #else
--      url_fclose(this->avFormatContext->pb);
-+      avio_close(this->avFormatContext->pb);
- #endif
-       this->openedFile = 0;
-       }
diff --git a/sci-libs/vtk/files/vtk-5.10.1-libav-9.patch b/sci-libs/vtk/files/vtk-5.10.1-libav-9.patch
deleted file mode 100644
index eb7b71c5ec9e..000000000000
--- a/sci-libs/vtk/files/vtk-5.10.1-libav-9.patch
+++ /dev/null
@@ -1,117 +0,0 @@
-diff -burN VTK5.10.1.old/IO/vtkFFMPEGWriter.cxx VTK5.10.1/IO/vtkFFMPEGWriter.cxx
---- VTK5.10.1.old/IO/vtkFFMPEGWriter.cxx	2013-05-25 01:26:52.768954436 +0200
-+++ VTK5.10.1/IO/vtkFFMPEGWriter.cxx	2013-05-25 11:13:53.112672449 +0200
-@@ -60,9 +60,6 @@
- 
-   AVStream *avStream;
- 
--  unsigned char *codecBuf;
--  int codecBufSize;
--
-   AVFrame *rgbInput;
-   AVFrame *yuvOutput;
- 
-@@ -83,7 +80,6 @@
- 
-   this->avStream = NULL;
- 
--  this->codecBuf = NULL;
-   this->rgbInput = NULL;
-   this->yuvOutput = NULL;
- 
-@@ -140,7 +136,7 @@
-   strcpy(this->avFormatContext->filename, this->Writer->GetFileName());
- 
-   //create a stream for that file
--  this->avStream = av_new_stream(this->avFormatContext, 0);
-+  this->avStream = avformat_new_stream(this->avFormatContext, NULL);
-   if (!this->avStream) 
-     {
-     vtkGenericWarningMacro (<< "Could not create video stream.");
-@@ -199,7 +195,7 @@
-     vtkGenericWarningMacro (<< "Codec not found." );
-     return 0;
-     }
--  if (avcodec_open(c, codec) < 0) 
-+  if (avcodec_open2(c, codec, NULL) < 0)
-     {
-     vtkGenericWarningMacro (<< "Could not open codec.");
-     return 0;
-@@ -207,15 +203,6 @@
- 
-   //create buffers for the codec to work with.
- 
--  //working compression space
--  this->codecBufSize = 2*c->width*c->height*4; //hopefully this is enough
--  this->codecBuf = new unsigned char[this->codecBufSize];
--  if (!this->codecBuf)
--    {
--    vtkGenericWarningMacro (<< "Could not make codec working space." );
--    return 0;
--    }
--
-   //for the output of the writer's input...
-   this->rgbInput = avcodec_alloc_frame();
-   if (!this->rgbInput)
-@@ -316,38 +303,24 @@
-     return 0;
-     }
- #endif
--
-+  AVPacket pkt = { 0 };
-+  int got_frame;
- 
-   //run the encoder
--  int toAdd = avcodec_encode_video(cc, 
--                                   this->codecBuf, 
--                                   this->codecBufSize, 
--                                   this->yuvOutput);
-+  int ret = avcodec_encode_video2(cc,
-+                                  &pkt,
-+                                  this->yuvOutput,
-+                                  &got_frame);
- 
-   //dump the compressed result to file
--  if (toAdd) 
-+  if (got_frame)
-     {
--    //create an avpacket to output the compressed result
--    AVPacket pkt;
--    av_init_packet(&pkt);
--
--   //to do playback at actual recorded rate, this will need more work    
--    pkt.pts = cc->coded_frame->pts;
--    //pkt.dts = ?; not dure what decompression time stamp should be
--    pkt.data = this->codecBuf;
--    pkt.size = toAdd;
-     pkt.stream_index = this->avStream->index;
--    if (cc->coded_frame->key_frame) //treat keyframes well
--      {
--      pkt.flags |= AV_PKT_FLAG_KEY;
--      }
--    pkt.duration = 0; //presentation duration in time_base units or 0 if NA
--    pkt.pos = -1; //byte position in stream or -1 if NA
-     
--    toAdd = av_write_frame(this->avFormatContext, &pkt);
-+    ret = av_write_frame(this->avFormatContext, &pkt);
-     } 
-   
--  if (toAdd) //should not have anything left over
-+  if (ret < 0) //should not have anything left over
-     {
-     vtkGenericWarningMacro (<< "Problem encoding frame." );
-     return 0;
-@@ -373,12 +346,6 @@
-     this->rgbInput = NULL;
-     }
-   
--  if (this->codecBuf)
--    {
--    av_free(this->codecBuf);
--    this->codecBuf = NULL;
--    }
--
-   if (this->avFormatContext)
-     {          
-     if (this->openedFile)
-Binary files VTK5.10.1.old/IO/.vtkFFMPEGWriter.cxx.swp and VTK5.10.1/IO/.vtkFFMPEGWriter.cxx.swp differ
diff --git a/sci-libs/vtk/files/vtk-5.10.1-tcl8.6.patch b/sci-libs/vtk/files/vtk-5.10.1-tcl8.6.patch
deleted file mode 100644
index ed7ec08c2ea7..000000000000
--- a/sci-libs/vtk/files/vtk-5.10.1-tcl8.6.patch
+++ /dev/null
@@ -1,57 +0,0 @@
- Common/vtkTclUtil.cxx | 19 ++++++++++++++-----
- 1 file changed, 14 insertions(+), 5 deletions(-)
-
-diff --git a/Common/vtkTclUtil.cxx b/Common/vtkTclUtil.cxx
-index 390b0a4..2b7bccb 100644
---- a/Common/vtkTclUtil.cxx
-+++ b/Common/vtkTclUtil.cxx
-@@ -21,6 +21,12 @@
- #include <string>
- #include <vtksys/SystemTools.hxx>
- 
-+#if (TCL_MAJOR_VERSION == 8) && (TCL_MINOR_VERSION < 6)
-+#define vtkTclGetErrorLine(m) (m->errorLine)
-+#else
-+#define vtkTclGetErrorLine(m) (Tcl_GetErrorLine(m))
-+#endif
-+
- extern "C"
- {
- #if (TCL_MAJOR_VERSION == 8) && (TCL_MINOR_VERSION >= 4)
-@@ -490,13 +496,15 @@ VTKTCL_EXPORT void vtkTclVoidFunc(void *arg)
-       vtkGenericWarningMacro("Error returned from vtk/tcl callback:\n" <<
-                              arg2->command << endl <<
-                              Tcl_GetVar(arg2->interp,(char *)("errorInfo"),0) <<
--                             " at line number " << arg2->interp->errorLine);
-+                             " at line number " <<
-+                             vtkTclGetErrorLine(arg2->interp));
-       }
-     else
-       {
-       vtkGenericWarningMacro("Error returned from vtk/tcl callback:\n" <<
-                              arg2->command << endl <<
--                             " at line number " << arg2->interp->errorLine);
-+                             " at line number " <<
-+                             vtkTclGetErrorLine(arg2->interp));
-       }
-     }
- }
-@@ -723,14 +731,15 @@ void vtkTclCommand::Execute(vtkObject *, unsigned long, void *)
-       vtkGenericWarningMacro("Error returned from vtk/tcl callback:\n" <<
-                              this->StringCommand << endl <<
-                              Tcl_GetVar(this->Interp,(char *)("errorInfo"),0) <<
--                             " at line number " << this->Interp->errorLine);
-+                             " at line number " <<
-+                             vtkTclGetErrorLine(this->Interp));
-       }
-     else
-       {
-       vtkGenericWarningMacro("Error returned from vtk/tcl callback:\n" <<
-                              this->StringCommand << endl <<
--                             " at line number " << 
--                             this->Interp->errorLine);
-+                             " at line number " <<
-+                             vtkTclGetErrorLine(this->Interp));
-       }
-     }
-   else if (res == -1)
diff --git a/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch b/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch
deleted file mode 100644
index c7da78678825..000000000000
--- a/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naur VTK/CMakeLists.txt VTK.new/CMakeLists.txt
---- VTK/CMakeLists.txt	2008-05-13 17:50:09.000000000 -0400
-+++ VTK.new/CMakeLists.txt	2008-10-05 10:34:42.000000000 -0400
-@@ -182,7 +182,7 @@
- # Compute the proper location for installing the Tcl package.  This
- # must be a fixed relative path below the library install location and
- # is therefore not settable by parent projects.
--SET(VTK_INSTALL_TCL_DIR ${VTK_INSTALL_LIB_DIR})
-+SET(VTK_INSTALL_TCL_DIR ${VTK_INSTALL_PACKAGE_DIR})
- 
- IF(NOT VTK_INSTALL_JAVA_DIR)
-   SET(VTK_INSTALL_JAVA_DIR ${VTK_INSTALL_PACKAGE_DIR}/java)
diff --git a/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch b/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch
deleted file mode 100644
index 90c6d6a1fed3..000000000000
--- a/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch
+++ /dev/null
@@ -1,194 +0,0 @@
-diff --git a/Infovis/Testing/Cxx/TestBoostAdapter.cxx b/Infovis/Testing/Cxx/TestBoostAdapter.cxx
-index 6af2855..484a9e0 100644
---- a/Infovis/Testing/Cxx/TestBoostAdapter.cxx
-+++ b/Infovis/Testing/Cxx/TestBoostAdapter.cxx
-@@ -36,8 +36,8 @@
- #include <boost/graph/strong_components.hpp>
- #include <boost/graph/dijkstra_shortest_paths.hpp>
- #include <boost/graph/transitive_closure.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- #include "vtkGraph.h"
- #include "vtkBoostGraphAdapter.h"
-diff --git a/Infovis/vtkBoostBiconnectedComponents.cxx b/Infovis/vtkBoostBiconnectedComponents.cxx
-index 6799dd0..dd759d5 100644
---- a/Infovis/vtkBoostBiconnectedComponents.cxx
-+++ b/Infovis/vtkBoostBiconnectedComponents.cxx
-@@ -32,7 +32,7 @@
- #include "vtkGraph.h"
- #include "vtkBoostGraphAdapter.h"
- #include <boost/graph/biconnected_components.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/version.hpp>
- #include <vtksys/stl/vector>
- #include <vtksys/stl/utility>
-diff --git a/Infovis/vtkBoostBrandesCentrality.cxx b/Infovis/vtkBoostBrandesCentrality.cxx
-index e214a72..443c039 100644
---- a/Infovis/vtkBoostBrandesCentrality.cxx
-+++ b/Infovis/vtkBoostBrandesCentrality.cxx
-@@ -36,7 +36,7 @@
- 
- #include <boost/graph/adjacency_list.hpp>
- #include <boost/graph/betweenness_centrality.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- using namespace boost;
- 
-diff --git a/Infovis/vtkBoostBreadthFirstSearch.cxx b/Infovis/vtkBoostBreadthFirstSearch.cxx
-index 7fab585..6e56a7c 100644
---- a/Infovis/vtkBoostBreadthFirstSearch.cxx
-+++ b/Infovis/vtkBoostBreadthFirstSearch.cxx
-@@ -46,8 +46,8 @@
- 
- #include <boost/graph/visitors.hpp>
- #include <boost/graph/breadth_first_search.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- #include <vtksys/stl/utility> // for pair
-diff --git a/Infovis/vtkBoostBreadthFirstSearchTree.cxx b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-index 5c64516..64ee7b5 100644
---- a/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-+++ b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-@@ -39,7 +39,7 @@
- #include "vtkTree.h"
- 
- #include <boost/graph/breadth_first_search.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Infovis/vtkBoostConnectedComponents.cxx b/Infovis/vtkBoostConnectedComponents.cxx
-index 69e9d8f..c88f4ab 100644
---- a/Infovis/vtkBoostConnectedComponents.cxx
-+++ b/Infovis/vtkBoostConnectedComponents.cxx
-@@ -33,7 +33,7 @@
- 
- #include "vtkBoostGraphAdapter.h"
- #include <boost/graph/strong_components.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- using namespace boost;
- 
-diff --git a/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx b/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
-index b0c89de..7ea3aa9 100644
---- a/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
-+++ b/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
-@@ -40,7 +40,7 @@ PURPOSE.  See the above copyright notice for more information.
- #include "vtkTree.h"
- 
- #include <boost/graph/kruskal_min_spanning_tree.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Infovis/vtkBoostPrimMinimumSpanningTree.cxx b/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
-index 935d0f7..48716fd 100644
---- a/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
-+++ b/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
-@@ -39,7 +39,7 @@ PURPOSE.  See the above copyright notice for more information.
- #include "vtkTree.h"
- 
- #include <boost/graph/prim_minimum_spanning_tree.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Infovis/vtkTreeLayoutStrategy.cxx b/Infovis/vtkTreeLayoutStrategy.cxx
-index 6efa586..222afe9 100644
---- a/Infovis/vtkTreeLayoutStrategy.cxx
-+++ b/Infovis/vtkTreeLayoutStrategy.cxx
-@@ -375,8 +375,8 @@ void vtkTreeLayoutStrategy::PrintSelf(ostream& os, vtkIndent indent)
- #include "vtkTreeToBoostAdapter.h"
- #include <boost/graph/visitors.hpp>
- #include <boost/graph/depth_first_search.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Parallel/vtkPBGLBreadthFirstSearch.cxx b/Parallel/vtkPBGLBreadthFirstSearch.cxx
-index 2b4681b..eebeaa9 100644
---- a/Parallel/vtkPBGLBreadthFirstSearch.cxx
-+++ b/Parallel/vtkPBGLBreadthFirstSearch.cxx
-@@ -50,8 +50,8 @@
- #include <boost/graph/distributed/breadth_first_search.hpp>
- #include <boost/parallel/algorithm.hpp>
- #include <boost/graph/visitors.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- #include <vtksys/stl/utility> // for pair
-diff --git a/Parallel/vtkPBGLGraphAdapter.h b/Parallel/vtkPBGLGraphAdapter.h
-index 7b467b0..bacfd3a 100644
---- a/Parallel/vtkPBGLGraphAdapter.h
-+++ b/Parallel/vtkPBGLGraphAdapter.h
-@@ -31,7 +31,7 @@
- #include <boost/graph/distributed/mpi_process_group.hpp>
- #include <boost/graph/properties.hpp>
- #include <boost/graph/parallel/container_traits.hpp>
--#include <boost/parallel/local_property_map.hpp>
-+#include <boost/property_map/parallel/local_property_map.hpp>
- #include <boost/serialization/base_object.hpp>
- #include <boost/functional/hash.hpp>
- //ETX
-diff --git a/Parallel/vtkPBGLMinimumSpanningTree.cxx b/Parallel/vtkPBGLMinimumSpanningTree.cxx
-index da4647e..f9c3229 100644
---- a/Parallel/vtkPBGLMinimumSpanningTree.cxx
-+++ b/Parallel/vtkPBGLMinimumSpanningTree.cxx
-@@ -48,8 +48,8 @@
- #include <boost/graph/distributed/dehne_gotz_min_spanning_tree.hpp>
- #include <boost/graph/distributed/vertex_list_adaptor.hpp>
- #include <boost/parallel/global_index_map.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- #include <vtksys/stl/utility> // for pair
-diff --git a/Parallel/vtkPBGLShortestPaths.cxx b/Parallel/vtkPBGLShortestPaths.cxx
-index 074143f..8517304 100644
---- a/Parallel/vtkPBGLShortestPaths.cxx
-+++ b/Parallel/vtkPBGLShortestPaths.cxx
-@@ -49,8 +49,8 @@
- 
- #include <boost/graph/distributed/delta_stepping_shortest_paths.hpp>
- #include <boost/parallel/algorithm.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- #include <vtksys/stl/utility> // for pair
- 
-diff --git a/Parallel/vtkPBGLVertexColoring.cxx b/Parallel/vtkPBGLVertexColoring.cxx
-index 9aa87a0..301a245 100644
---- a/Parallel/vtkPBGLVertexColoring.cxx
-+++ b/Parallel/vtkPBGLVertexColoring.cxx
-@@ -47,7 +47,7 @@
- 
- #include <boost/graph/distributed/boman_et_al_graph_coloring.hpp>
- #include <boost/parallel/algorithm.hpp>
--#include <boost/property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
- 
- #include <vtksys/stl/utility> // for pair
- 
diff --git a/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch b/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch
deleted file mode 100644
index 53d43ee804b9..000000000000
--- a/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch
+++ /dev/null
@@ -1,35 +0,0 @@
-diff -Naur VTK/CMake/FindCg.cmake VTK.new/CMake/FindCg.cmake
---- VTK/CMake/FindCg.cmake	2005-10-04 11:25:51.000000000 -0400
-+++ VTK.new/CMake/FindCg.cmake	2009-07-17 14:10:30.000000000 -0400
-@@ -82,6 +82,7 @@
-     FIND_PROGRAM( CG_COMPILER cgc
-       /usr/bin
-       /usr/local/bin
-+      /opt/nvidia-cg-toolkit/bin
-       DOC "The Cg Compiler"
-       )
-     GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
-@@ -89,6 +90,7 @@
-     FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
-       /usr/include
-       /usr/local/include
-+      /opt/nvidia-cg-toolkit/include
-       ${CG_COMPILER_SUPER_DIR}/include
-       DOC "The directory where Cg/cg.h resides"
-       )
-@@ -98,6 +100,7 @@
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
-@@ -108,6 +111,7 @@
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
diff --git a/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch b/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch
deleted file mode 100644
index 1f12ae92658d..000000000000
--- a/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- IO/vtkPNGReader.cxx
-+++ IO/vtkPNGReader.cxx
-@@ -116,7 +116,7 @@
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
-@@ -225,7 +225,7 @@
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
diff --git a/sci-libs/vtk/files/vtk-5.6.0-R.patch b/sci-libs/vtk/files/vtk-5.6.0-R.patch
deleted file mode 100644
index 1327121c20c6..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-R.patch
+++ /dev/null
@@ -1,57 +0,0 @@
-diff --git a/CMake/FindR.cmake b/CMake/FindR.cmake
-index ee49570..c830db0 100644
---- a/CMake/FindR.cmake
-+++ b/CMake/FindR.cmake
-@@ -18,13 +18,12 @@ IF (R_COMMAND)
- ENDIF (R_COMMAND)
- SET(CMAKE_FIND_APPBUNDLE ${TEMP_CMAKE_FIND_APPBUNDLE})
- 
--FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/local/lib /usr/local/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
-+FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/lib /usr/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
- FIND_LIBRARY(R_LIBRARY_BASE R PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "R library (example libR.a, libR.dylib, etc.).")
--FIND_LIBRARY(R_LIBRARY_BLAS Rblas PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rblas library (example libRblas.a, libRblas.dylib, etc.).")
--FIND_LIBRARY(R_LIBRARY_LAPACK Rlapack PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib  DOC "Rlapack library (example libRlapack.a, libRlapack.dylib, etc.).")
-+FIND_LIBRARY(R_LIBRARY_MATH Rmath PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rmath library (example libRmath.a, libRmath.dylib, etc.).")
- FIND_LIBRARY(R_LIBRARY_READLINE readline DOC "(Optional) system readline library. Only required if the R libraries were build with readline support.")
- 
--SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_BLAS} ${R_LIBRARY_LAPACK} ${R_LIBRARY_BASE})
-+SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_MATH} ${R_LIBRARY_BASE})
- IF (R_LIBRARY_READLINE)
-   SET(R_LIBRARIES ${R_LIBRARIES} ${R_LIBRARY_READLINE})
- ENDIF (R_LIBRARY_READLINE)
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 9d4e881..1a828a4 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -1054,8 +1054,18 @@ IF(VTK_WRAP_JAVA)
-   ENDIF(JAVA_AWT_LIBRARY)
- ENDIF(VTK_WRAP_JAVA)
- 
-+IF(VTK_USE_GNU_R)
-+  FIND_PACKAGE(R)
-+ENDIF(VTK_USE_GNU_R)
- 
--
-+IF(VTK_USE_BOOST)
-+  if (VTK_USE_PARALLEL_BGL)
-+    FIND_PACKAGE(Boost 1.39.0 REQUIRED
-+      COMPONENTS mpi serialization filesystem system graph_parallel)
-+  else (VTK_USE_PARALLEL_BGL)
-+    FIND_PACKAGE(Boost REQUIRED)
-+  endif (VTK_USE_PARALLEL_BGL)
-+ENDIF(VTK_USE_BOOST)
- #-----------------------------------------------------------------------------
- # The entire VTK tree should use the same include path.
- 
-diff --git a/Graphics/vtkRInterface.cxx b/Graphics/vtkRInterface.cxx
-index 324e845..56a4869 100644
---- a/Graphics/vtkRInterface.cxx
-+++ b/Graphics/vtkRInterface.cxx
-@@ -23,6 +23,7 @@
- #undef HAVE_UINTPTR_T
- #ifdef HAVE_VTK_UINTPTR_T
- #define HAVE_UINTPTR_T HAVE_VTK_UINTPTR_T
-+#include <stdint.h>
- #endif
- 
- #include "vtkInformation.h"
diff --git a/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch b/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch
deleted file mode 100644
index 9319378acb1a..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/Infovis/vtkTreeLayoutStrategy.cxx b/Infovis/vtkTreeLayoutStrategy.cxx
-index 4a764ea..74d0b53 100644
---- a/Infovis/vtkTreeLayoutStrategy.cxx
-+++ b/Infovis/vtkTreeLayoutStrategy.cxx
-@@ -388,7 +388,7 @@ void vtkTreeLayoutStrategy::PrintSelf(ostream& os, vtkIndent indent)
- #include "vtkTreeToBoostAdapter.h"
- #include <boost/graph/visitors.hpp>
- #include <boost/graph/depth_first_search.hpp>
--#include <boost/property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
diff --git a/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch b/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch
deleted file mode 100644
index 984bf5008497..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-diff --git a/CMake/FindCg.cmake b/CMake/FindCg.cmake
-index ceb41de..5eb6003 100644
---- a/CMake/FindCg.cmake
-+++ b/CMake/FindCg.cmake
-@@ -82,6 +82,7 @@ ELSE (APPLE)
-     FIND_PROGRAM( CG_COMPILER cgc
-       /usr/bin
-       /usr/local/bin
-+      /opt/nvidia-cg-toolkit/bin
-       DOC "The Cg Compiler"
-       )
-     GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
-@@ -89,6 +90,7 @@ ELSE (APPLE)
-     FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
-       /usr/include
-       /usr/local/include
-+      /opt/nvidia-cg-toolkit/include
-       ${CG_COMPILER_SUPER_DIR}/include
-       DOC "The directory where Cg/cg.h resides"
-       )
-@@ -98,6 +100,7 @@ ELSE (APPLE)
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
-@@ -108,6 +111,7 @@ ELSE (APPLE)
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
diff --git a/sci-libs/vtk/files/vtk-5.6.0-ffmpeg.patch b/sci-libs/vtk/files/vtk-5.6.0-ffmpeg.patch
deleted file mode 100644
index 2b600c067bc9..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-ffmpeg.patch
+++ /dev/null
@@ -1,42 +0,0 @@
- CMake/vtkFFMPEGTestAvAlloc.cxx   |    2 +-
- CMake/vtkFFMPEGTestURLFClose.cxx |    2 +-
- IO/vtkFFMPEGWriter.cxx           |    2 +-
- 3 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/CMake/vtkFFMPEGTestAvAlloc.cxx b/CMake/vtkFFMPEGTestAvAlloc.cxx
-index ad691e3..1025c22 100644
---- a/CMake/vtkFFMPEGTestAvAlloc.cxx
-+++ b/CMake/vtkFFMPEGTestAvAlloc.cxx
-@@ -1,6 +1,6 @@
- extern "C" {
- #ifdef HAS_OLD_HEADER
--# include <ffmpeg/avformat.h>
-+# include <libavformat/avformat.h>
- #else
- # include <libavformat/avformat.h>
- #endif
-diff --git a/CMake/vtkFFMPEGTestURLFClose.cxx b/CMake/vtkFFMPEGTestURLFClose.cxx
-index 0bf4314..8c1df58 100644
---- a/CMake/vtkFFMPEGTestURLFClose.cxx
-+++ b/CMake/vtkFFMPEGTestURLFClose.cxx
-@@ -1,6 +1,6 @@
- extern "C" {
- #ifdef HAS_OLD_HEADER
--# include <ffmpeg/avformat.h>
-+# include <libavformat/avformat.h>
- #else
- # include <libavformat/avformat.h>
- #endif
-diff --git a/IO/vtkFFMPEGWriter.cxx b/IO/vtkFFMPEGWriter.cxx
-index b109c08..e056418 100644
---- a/IO/vtkFFMPEGWriter.cxx
-+++ b/IO/vtkFFMPEGWriter.cxx
-@@ -22,7 +22,7 @@
- 
- extern "C" {
- #ifdef VTK_FFMPEG_HAS_OLD_HEADER
--# include <ffmpeg/avformat.h>
-+# include <libavformat/avformat.h>
- #else
- # include <libavformat/avformat.h>
- #endif
diff --git a/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch b/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch
deleted file mode 100644
index db1f87d3afb2..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-diff --git a/IO/vtkPNGReader.cxx b/IO/vtkPNGReader.cxx
-index d1f5c2f..0bf00e4 100644
---- a/IO/vtkPNGReader.cxx
-+++ b/IO/vtkPNGReader.cxx
-@@ -116,7 +116,7 @@ void vtkPNGReader::ExecuteInformation()
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
-@@ -225,7 +225,7 @@ void vtkPNGReaderUpdate2(vtkPNGReader *self, OT *outPtr,
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
diff --git a/sci-libs/vtk/files/vtk-5.6.0-odbc.patch b/sci-libs/vtk/files/vtk-5.6.0-odbc.patch
deleted file mode 100644
index be24af11ac33..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-odbc.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naur CMake/FindODBC.cmake.orig CMake/FindODBC.cmake
---- CMake/FindODBC.cmake.orig	2008-10-08 13:51:36.000000000 -0400
-+++ CMake/FindODBC.cmake	2010-01-21 22:11:26.000000000 -0500
-@@ -30,7 +30,7 @@
- )
- 
- FIND_LIBRARY( ODBC_LIBRARY 
--  NAMES iodbc unixodbc
-+  NAMES iodbc unixodbc odbc
-   PATHS
-   /usr/lib
-   /usr/lib/odbc
diff --git a/sci-libs/vtk/files/vtk-5.6.1-ffmpeg.patch b/sci-libs/vtk/files/vtk-5.6.1-ffmpeg.patch
deleted file mode 100644
index 34ec528854a7..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.1-ffmpeg.patch
+++ /dev/null
@@ -1,42 +0,0 @@
- CMake/vtkFFMPEGTestAvAlloc.cxx   |    2 +-
- CMake/vtkFFMPEGTestURLFClose.cxx |    2 +-
- IO/vtkFFMPEGWriter.cxx           |    2 +-
- 3 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/CMake/vtkFFMPEGTestAvAlloc.cxx b/CMake/vtkFFMPEGTestAvAlloc.cxx
-index ad691e3..32489d5 100644
---- a/CMake/vtkFFMPEGTestAvAlloc.cxx
-+++ b/CMake/vtkFFMPEGTestAvAlloc.cxx
-@@ -1,6 +1,6 @@
- extern "C" {
- #ifdef HAS_OLD_HEADER
--# include <ffmpeg/avformat.h>
-+# include <libavformat/avformat.h>
- #else
- # include <libavformat/avformat.h>
- #endif
-diff --git a/CMake/vtkFFMPEGTestURLFClose.cxx b/CMake/vtkFFMPEGTestURLFClose.cxx
-index 0bf4314..1c10a93 100644
---- a/CMake/vtkFFMPEGTestURLFClose.cxx
-+++ b/CMake/vtkFFMPEGTestURLFClose.cxx
-@@ -1,6 +1,6 @@
- extern "C" {
- #ifdef HAS_OLD_HEADER
--# include <ffmpeg/avformat.h>
-+# include <libavformat/avformat.h>
- #else
- # include <libavformat/avformat.h>
- #endif
-diff --git a/IO/vtkFFMPEGWriter.cxx b/IO/vtkFFMPEGWriter.cxx
-index 52673ef..ffbb78f 100644
---- a/IO/vtkFFMPEGWriter.cxx
-+++ b/IO/vtkFFMPEGWriter.cxx
-@@ -22,7 +22,7 @@
- 
- extern "C" {
- #ifdef VTK_FFMPEG_HAS_OLD_HEADER
--# include <ffmpeg/avformat.h>
-+# include <libavformat/avformat.h>
- #else
- # include <libavformat/avformat.h>
- #endif
diff --git a/sci-libs/vtk/files/vtk-5.6.1-gcc-46.patch b/sci-libs/vtk/files/vtk-5.6.1-gcc-46.patch
deleted file mode 100644
index 263e24f69b3d..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.1-gcc-46.patch
+++ /dev/null
@@ -1,29 +0,0 @@
- Common/vtkPythonUtil.cxx          |    2 ++
- Utilities/vtkmetaio/metaUtils.cxx |    1 +
- 2 files changed, 3 insertions(+), 0 deletions(-)
-
-diff --git a/Common/vtkPythonUtil.cxx b/Common/vtkPythonUtil.cxx
-index 7bc7660..d218e0d 100644
---- a/Common/vtkPythonUtil.cxx
-+++ b/Common/vtkPythonUtil.cxx
-@@ -31,6 +31,8 @@
- #include <vtkstd/map>
- #include <vtkstd/string>
- 
-+#include <cstddef>
-+
- // Silent warning like
- // "dereferencing type-punned pointer will break strict-aliasing rules"
- // it happens because this kind of expression: (long *)&ptr
-diff --git a/Utilities/vtkmetaio/metaUtils.cxx b/Utilities/vtkmetaio/metaUtils.cxx
-index 08d3e8d..bbcc9ec 100644
---- a/Utilities/vtkmetaio/metaUtils.cxx
-+++ b/Utilities/vtkmetaio/metaUtils.cxx
-@@ -37,6 +37,7 @@
- #include <stdlib.h>
- #include <string.h>
- #include <string>
-+#include <cstddef>
- 
- #if defined (__BORLANDC__) && (__BORLANDC__ >= 0x0580)
- #include <mem.h>
diff --git a/sci-libs/vtk/files/vtk-5.6.1-libav-0.8.patch b/sci-libs/vtk/files/vtk-5.6.1-libav-0.8.patch
deleted file mode 100644
index 523919d6f676..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.1-libav-0.8.patch
+++ /dev/null
@@ -1,66 +0,0 @@
-Description: Upstream changes introduced in version 5.6.1-6.1
- This patch has been created by dpkg-source during the package build.
- Here's the last changelog entry, hopefully it gives details on why
- those changes were made:
- .
- vtk (5.6.1-6.1) unstable; urgency=low
- .
-   [ Michael Schutte ]
-   * Non-maintainer upload.
-   * Remove absolute paths to required libraries from
-     /usr/lib/vtk-5.6/VTKLibraryDepends.cmake after building, closes:
-     #506992.  Due to the multiarch transition, the original behavior
-     frequently causes reverse build-deps to FTBFS.  This change should
-     probably be reverted once all required libraries are multiarched.
- .
-   [ Steve M. Robbins ]
-   * Override lintian diagnostic about embedded libraries ftgl and sqlite.
-   * IO/vtkFFMPEGWriter.cxx: Applied fix from #638246 to build with libav
-     0.7.
- .
- The person named in the Author field signed this changelog entry.
-Author: Steve M. Robbins <smr@debian.org>
-Bug-Debian: http://bugs.debian.org/506992
-
----
-The information above should follow the Patch Tagging Guidelines, please
-checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
-are templates for supplementary fields that you might want to add:
-
-Origin: <vendor|upstream|other>, <url of original patch>
-Bug: <url in upstream bugtracker>
-Bug-Debian: http://bugs.debian.org/<bugnumber>
-Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
-Forwarded: <no|not-needed|url proving that it has been forwarded>
-Reviewed-By: <name and email of someone who approved the patch>
-Last-Update: <YYYY-MM-DD>
-
---- vtk-5.6.1.orig/IO/vtkFFMPEGWriter.cxx
-+++ vtk-5.6.1/IO/vtkFFMPEGWriter.cxx
-@@ -123,7 +123,7 @@ int vtkFFMPEGWriterInternal::Start()
-     }
- 
-   //choose avi media file format
--  this->avOutputFormat = guess_format("avi", NULL, NULL);
-+  this->avOutputFormat = av_guess_format("avi", NULL, NULL);
-   if (!this->avOutputFormat) 
-     {
-     vtkGenericWarningMacro (<< "Could not open the avi media file format.");
-@@ -150,7 +150,7 @@ int vtkFFMPEGWriterInternal::Start()
-   //Set up the codec.
-   AVCodecContext *c = this->avStream->codec;
-   c->codec_id = (CodecID)this->avOutputFormat->video_codec;
--  c->codec_type = CODEC_TYPE_VIDEO;
-+  c->codec_type = AVMEDIA_TYPE_VIDEO;
-   c->width = this->Dim[0];
-   c->height = this->Dim[1];
-   c->pix_fmt = PIX_FMT_YUVJ420P;
-@@ -329,7 +329,7 @@ int vtkFFMPEGWriterInternal::Write(vtkIm
-     pkt.stream_index = this->avStream->index;
-     if (cc->coded_frame->key_frame) //treat keyframes well
-       {
--      pkt.flags |= PKT_FLAG_KEY;
-+      pkt.flags |= AV_PKT_FLAG_KEY;
-       }
-     pkt.duration = 0; //presentation duration in time_base units or 0 if NA
-     pkt.pos = -1; //byte position in stream or -1 if NA
diff --git a/sci-libs/vtk/files/vtk-5.6.1-libpng15.patch b/sci-libs/vtk/files/vtk-5.6.1-libpng15.patch
deleted file mode 100644
index 5bb5cbfb8cd6..000000000000
--- a/sci-libs/vtk/files/vtk-5.6.1-libpng15.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-http://bugs.gentoo.org/378393
-
---- VTK/IO/vtkPNGWriter.cxx
-+++ VTK/IO/vtkPNGWriter.cxx
-@@ -147,7 +147,7 @@
-   void vtkPNGWriteErrorFunction(png_structp png_ptr,
-                                 png_const_charp vtkNotUsed(error_msg))
-   {
--    longjmp(png_ptr->jmpbuf, 1);
-+    longjmp(png_jmpbuf(png_ptr), 1);
-   }
- }
- 
-@@ -223,7 +223,7 @@
-       png_init_io(png_ptr, this->TempFP);
-       png_set_error_fn(png_ptr, png_ptr,
-                        vtkPNGWriteErrorFunction, vtkPNGWriteWarningFunction);
--      if (setjmp(png_ptr->jmpbuf))
-+      if (setjmp(png_jmpbuf(png_ptr)))
-         {
-         fclose(this->TempFP);
-         this->SetErrorCode(vtkErrorCode::OutOfDiskSpaceError);
diff --git a/sci-libs/vtk/files/vtk-5.8.0-R.patch b/sci-libs/vtk/files/vtk-5.8.0-R.patch
deleted file mode 100644
index ce6dcde59e9d..000000000000
--- a/sci-libs/vtk/files/vtk-5.8.0-R.patch
+++ /dev/null
@@ -1,45 +0,0 @@
-diff --git a/CMake/FindR.cmake b/CMake/FindR.cmake
-index ee49570..c830db0 100644
---- a/CMake/FindR.cmake
-+++ b/CMake/FindR.cmake
-@@ -18,13 +18,12 @@ IF (R_COMMAND)
- ENDIF (R_COMMAND)
- SET(CMAKE_FIND_APPBUNDLE ${TEMP_CMAKE_FIND_APPBUNDLE})
- 
--FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/local/lib /usr/local/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
-+FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/lib /usr/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
- FIND_LIBRARY(R_LIBRARY_BASE R PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "R library (example libR.a, libR.dylib, etc.).")
--FIND_LIBRARY(R_LIBRARY_BLAS Rblas PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rblas library (example libRblas.a, libRblas.dylib, etc.).")
--FIND_LIBRARY(R_LIBRARY_LAPACK Rlapack PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib  DOC "Rlapack library (example libRlapack.a, libRlapack.dylib, etc.).")
-+FIND_LIBRARY(R_LIBRARY_MATH Rmath PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rmath library (example libRmath.a, libRmath.dylib, etc.).")
- FIND_LIBRARY(R_LIBRARY_READLINE readline DOC "(Optional) system readline library. Only required if the R libraries were build with readline support.")
- 
--SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_BLAS} ${R_LIBRARY_LAPACK} ${R_LIBRARY_BASE})
-+SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_MATH} ${R_LIBRARY_BASE})
- IF (R_LIBRARY_READLINE)
-   SET(R_LIBRARIES ${R_LIBRARIES} ${R_LIBRARY_READLINE})
- ENDIF (R_LIBRARY_READLINE)
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 9d4e881..1a828a4 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -1054,8 +1054,18 @@ IF(VTK_WRAP_JAVA)
-   ENDIF(JAVA_AWT_LIBRARY)
- ENDIF(VTK_WRAP_JAVA)
- 
-+IF(VTK_USE_GNU_R)
-+  FIND_PACKAGE(R)
-+ENDIF(VTK_USE_GNU_R)
- 
--
-+IF(VTK_USE_BOOST)
-+  if (VTK_USE_PARALLEL_BGL)
-+    FIND_PACKAGE(Boost 1.39.0 REQUIRED
-+      COMPONENTS mpi serialization filesystem system graph_parallel)
-+  else (VTK_USE_PARALLEL_BGL)
-+    FIND_PACKAGE(Boost REQUIRED)
-+  endif (VTK_USE_PARALLEL_BGL)
-+ENDIF(VTK_USE_BOOST)
- #-----------------------------------------------------------------------------
- # The entire VTK tree should use the same include path.
- 
diff --git a/sci-libs/vtk/files/vtk-5.8.0-boost.patch b/sci-libs/vtk/files/vtk-5.8.0-boost.patch
deleted file mode 100644
index 30a0e9a4c606..000000000000
--- a/sci-libs/vtk/files/vtk-5.8.0-boost.patch
+++ /dev/null
@@ -1,39 +0,0 @@
-diff --git a/Infovis/vtkBoostBreadthFirstSearchTree.cxx b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-index c789f6b..13e7cb6 100644
---- a/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-+++ b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-@@ -47,6 +47,21 @@ using namespace boost;
- vtkStandardNewMacro(vtkBoostBreadthFirstSearchTree);
- 
- 
-+#if BOOST_VERSION >= 104800      // Boost 1.48.x
-+namespace {
-+  vtkIdType unwrap_edge_id(vtkEdgeType const &e) {
-+    return e.Id;
-+  }
-+  vtkIdType unwrap_edge_id(boost::detail::reverse_graph_edge_descriptor<vtkEdgeType> const &e) {
-+# if BOOST_VERSION == 104800
-+    return e.underlying_desc.Id;
-+# else
-+    return e.underlying_descx.Id;
-+# endif
-+  }
-+}
-+#endif
-+
- // Redefine the bfs visitor, the only visitor we
- // are using is the tree_edge visitor.
- template <typename IdMap>
-@@ -95,7 +106,12 @@ public:
- 
-     // Copy the vertex and edge data from the graph to the tree.
-     tree->GetVertexData()->CopyData(graph->GetVertexData(), v, tree_v);
-+#if BOOST_VERSION < 104800      // Boost 1.48.x
-     tree->GetEdgeData()->CopyData(graph->GetEdgeData(), e.Id, tree_e.Id);
-+#else
-+    tree->GetEdgeData()->CopyData(graph->GetEdgeData(),
-+                                  unwrap_edge_id(e), tree_e.Id);
-+#endif
-   }
- 
- private:
diff --git a/sci-libs/vtk/files/vtk-6.0.0-cg-path.patch b/sci-libs/vtk/files/vtk-6.0.0-cg-path.patch
deleted file mode 100644
index c83a06b2f3e9..000000000000
--- a/sci-libs/vtk/files/vtk-6.0.0-cg-path.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- Utilities/MaterialLibrary/CMakeLists.txt | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/Utilities/MaterialLibrary/CMakeLists.txt b/Utilities/MaterialLibrary/CMakeLists.txt
-index 330a189..ede97be 100644
---- a/Utilities/MaterialLibrary/CMakeLists.txt
-+++ b/Utilities/MaterialLibrary/CMakeLists.txt
-@@ -116,7 +116,7 @@ MACRO(get_modules modules prefix files )
- ENDMACRO(get_modules)
- 
- SET(CMD_DEP ProcessShader)
--SET(CMD ProcessShader)
-+SET(CMD ./ProcessShader.sh)
- 
- IF (VTK_USE_CG_SHADERS)
-   # Create the Cg library.
diff --git a/sci-libs/vtk/files/vtk-6.0.0-install.patch b/sci-libs/vtk/files/vtk-6.0.0-install.patch
deleted file mode 100644
index a97755ab69ff..000000000000
--- a/sci-libs/vtk/files/vtk-6.0.0-install.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-diff -up VTK6.0.0/CMake/vtkModuleTop.cmake.install VTK6.0.0/CMake/vtkModuleTop.cmake
---- VTK6.0.0/CMake/vtkModuleTop.cmake.install	2013-06-12 13:47:10.000000000 -0600
-+++ VTK6.0.0/CMake/vtkModuleTop.cmake	2013-07-12 16:15:15.706008475 -0600
-@@ -330,10 +330,15 @@ if (NOT VTK_INSTALL_NO_DEVELOPMENT)
-                 CMake/pythonmodules.h.in
-                 CMake/UseVTK.cmake
-                 CMake/FindTCL.cmake
-+                CMake/TopologicalSort.cmake
-                 CMake/vtkTclTkMacros.cmake
-                 CMake/vtk-forward.c.in
-                 CMake/vtkForwardingExecutable.cmake
-+                CMake/vtkGroups.cmake
-                 CMake/vtkJavaWrapping.cmake
-+                CMake/vtkMakeInstantiator.cmake
-+                CMake/vtkMakeInstantiator.cxx.in
-+                CMake/vtkMakeInstantiator.h.in
-                 CMake/vtkModuleAPI.cmake
-                 CMake/vtkModuleHeaders.cmake.in
-                 CMake/vtkModuleInfo.cmake.in
diff --git a/sci-libs/vtk/files/vtk-6.0.0-netcdf.patch b/sci-libs/vtk/files/vtk-6.0.0-netcdf.patch
deleted file mode 100644
index df0ef94890f7..000000000000
--- a/sci-libs/vtk/files/vtk-6.0.0-netcdf.patch
+++ /dev/null
@@ -1,75 +0,0 @@
-diff -up VTK/IO/NetCDF/CMakeLists.txt.netcdf VTK/IO/NetCDF/CMakeLists.txt
---- VTK/IO/NetCDF/CMakeLists.txt.netcdf	2013-01-28 14:44:35.000000000 -0700
-+++ VTK/IO/NetCDF/CMakeLists.txt	2013-01-28 15:40:00.825176295 -0700
-@@ -10,5 +10,5 @@ set(Module_SRCS
- 
- vtk_module_library(vtkIONetCDF ${Module_SRCS})
- 
--target_link_libraries(vtkIONetCDF vtkNetCDF_cxx)
-+target_link_libraries(vtkIONetCDF netcdf_c++ netcdf)
- set_target_properties(vtkIONetCDF PROPERTIES LINK_INTERFACE_LIBRARIES "")
-diff -up VTK/IO/ParallelNetCDF/CMakeLists.txt.netcdf VTK/IO/ParallelNetCDF/CMakeLists.txt
---- VTK/IO/ParallelNetCDF/CMakeLists.txt.netcdf	2013-01-28 14:44:35.000000000 -0700
-+++ VTK/IO/ParallelNetCDF/CMakeLists.txt	2013-01-28 15:40:00.825176295 -0700
-@@ -8,4 +8,4 @@ set(Module_SRCS
- 
- vtk_module_library(vtkIOParallelNetCDF ${Module_SRCS})
- 
--target_link_libraries(vtkIOParallelNetCDF vtkNetCDF_cxx)
-+target_link_libraries(vtkIOParallelNetCDF netcdf)
-diff -up VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt.netcdf VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt
---- VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt.netcdf	2013-01-28 14:44:36.000000000 -0700
-+++ VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt	2013-01-28 15:40:27.534030910 -0700
-@@ -241,7 +241,7 @@ ENDIF(APPLE)
- 
- 
- VTK_ADD_LIBRARY(vtkexoIIc ${cbind_SRCS})
--TARGET_LINK_LIBRARIES(vtkexoIIc vtkNetCDF)
-+TARGET_LINK_LIBRARIES(vtkexoIIc netcdf)
- 
- #INCLUDE (${CMAKE_ROOT}/Modules/Dart.cmake)
- 
-diff -up VTK/ThirdParty/netcdf/CMakeLists.txt.netcdf VTK/ThirdParty/netcdf/CMakeLists.txt
---- VTK/ThirdParty/netcdf/CMakeLists.txt.netcdf	2013-01-28 14:44:36.000000000 -0700
-+++ VTK/ThirdParty/netcdf/CMakeLists.txt	2013-01-28 15:40:00.825176295 -0700
-@@ -1,8 +1,12 @@
- set(vtknetcdf_THIRD_PARTY 1)
--set(vtknetcdf_LIBRARIES vtkNetCDF vtkNetCDF_cxx)
--set(vtknetcdf_INCLUDE_DIRS
--  ${vtknetcdf_SOURCE_DIR}/vtknetcdf/include
--  ${vtknetcdf_BINARY_DIR}/vtknetcdf
--  )
-+if(NOT VTK_USE_SYSTEM_NETCDF)
-+  set(vtknetcdf_LIBRARIES vtkNetCDF vtkNetCDF_cxx)
-+  set(vtknetcdf_INCLUDE_DIRS
-+    ${vtknetcdf_SOURCE_DIR}/vtknetcdf/include
-+    ${vtknetcdf_BINARY_DIR}/vtknetcdf
-+    )
-+  add_subdirectory(vtknetcdf)
-+else(NOT VTK_USE_SYSTEM_NETCDF)
-+  set(vtknetcdf_LIBRARIES netcdf)
-+endif()
- vtk_module_export_info()
--add_subdirectory(vtknetcdf)
-diff -up VTK/ThirdParty/netcdf/vtk_netcdfcpp.h.netcdf VTK/ThirdParty/netcdf/vtk_netcdfcpp.h
---- VTK/ThirdParty/netcdf/vtk_netcdfcpp.h.netcdf	2013-01-28 14:44:36.000000000 -0700
-+++ VTK/ThirdParty/netcdf/vtk_netcdfcpp.h	2013-01-28 15:40:00.826176289 -0700
-@@ -16,6 +16,6 @@
- #define __vtk_netcdfcpp_h
- 
- /* Use the netcdf library configured for VTK.  */
--#include <vtknetcdf/cxx/netcdfcpp.h>
-+#include <netcdfcpp.h>
- 
- #endif
-diff -up VTK/ThirdParty/netcdf/vtk_netcdf.h.netcdf VTK/ThirdParty/netcdf/vtk_netcdf.h
---- VTK/ThirdParty/netcdf/vtk_netcdf.h.netcdf	2013-01-28 14:44:36.000000000 -0700
-+++ VTK/ThirdParty/netcdf/vtk_netcdf.h	2013-01-28 15:40:00.826176289 -0700
-@@ -16,6 +16,6 @@
- #define __vtk_netcdf_h
- 
- /* Use the netcdf library configured for VTK.  */
--#include <vtknetcdf/include/netcdf.h>
-+#include <netcdf.h>
- 
- #endif
diff --git a/sci-libs/vtk/files/vtk-6.0.0-system.patch b/sci-libs/vtk/files/vtk-6.0.0-system.patch
deleted file mode 100644
index 3e5762fe5d46..000000000000
--- a/sci-libs/vtk/files/vtk-6.0.0-system.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-diff -up VTK6.0.0/CMake/vtkModuleMacros.cmake.system VTK6.0.0/CMake/vtkModuleMacros.cmake
---- VTK6.0.0/CMake/vtkModuleMacros.cmake.system	2013-06-12 13:47:10.000000000 -0600
-+++ VTK6.0.0/CMake/vtkModuleMacros.cmake	2013-12-27 20:59:39.548152746 -0700
-@@ -613,7 +613,7 @@ macro(vtk_module_third_party _pkg)
-     message(FATAL_ERROR "Cannot specify both LIBRARIES and NO_LIBRARIES")
-   endif()
- 
--  option(VTK_USE_SYSTEM_${_upper} "Use system-installed ${_pkg}" OFF)
-+  option(VTK_USE_SYSTEM_${_upper} "Use system-installed ${_pkg}" ${VTK_USE_SYSTEM_LIBRARIES})
-   mark_as_advanced(VTK_USE_SYSTEM_${_upper})
- 
-   if(VTK_USE_SYSTEM_${_upper})
-diff -up VTK6.0.0/CMakeLists.txt.system VTK6.0.0/CMakeLists.txt
---- VTK6.0.0/CMakeLists.txt.system	2013-06-12 13:47:10.000000000 -0600
-+++ VTK6.0.0/CMakeLists.txt	2013-12-27 20:59:39.548152746 -0700
-@@ -107,6 +107,11 @@ set(VTK_INSTALL_INCLUDE_DIR_CM24 ${VTK_I
- set(VTK_INSTALL_DOXYGEN_DIR_CM24 ${VTK_INSTALL_DATA_DIR}/doxygen)
- 
- #-----------------------------------------------------------------------------
-+# Do we try to use system libraries by default?
-+OPTION(VTK_USE_SYSTEM_LIBRARIES "Use the system's libraries by default." OFF)
-+MARK_AS_ADVANCED(VTK_USE_SYSTEM_LIBRARIES)
-+
-+#-----------------------------------------------------------------------------
- # The third party macros are still used in one or two third party builds.
- include(vtkThirdParty)
- 
diff --git a/sci-libs/vtk/files/vtk-6.0.0-vtkpython.patch b/sci-libs/vtk/files/vtk-6.0.0-vtkpython.patch
deleted file mode 100644
index f310479e8ab8..000000000000
--- a/sci-libs/vtk/files/vtk-6.0.0-vtkpython.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -up VTK6.0.0/Wrapping/Python/CMakeLists.txt.vtkpython VTK6.0.0/Wrapping/Python/CMakeLists.txt
---- VTK6.0.0/Wrapping/Python/CMakeLists.txt.vtkpython	2013-06-12 13:47:10.000000000 -0600
-+++ VTK6.0.0/Wrapping/Python/CMakeLists.txt	2013-07-26 16:44:19.954295281 -0600
-@@ -371,3 +371,8 @@ endif()
- 
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/setup.py.in
-   ${CMAKE_CURRENT_BINARY_DIR}/setup.py @ONLY IMMEDIATE)
-+
-+if(NOT VTK_INSTALL_NO_RUNTIME AND NOT VTK_INSTALL_NO_PYTHON)
-+  install(TARGETS vtkpython ${VTKPYTHON_EXECUTABLE}
-+    DESTINATION ${VTK_INSTALL_RUNTIME_DIR})
-+endif()