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Diffstat (limited to 'sci-biology/samtools/samtools-1.16.1.ebuild')
-rw-r--r--sci-biology/samtools/samtools-1.16.1.ebuild47
1 files changed, 0 insertions, 47 deletions
diff --git a/sci-biology/samtools/samtools-1.16.1.ebuild b/sci-biology/samtools/samtools-1.16.1.ebuild
deleted file mode 100644
index 8047657df992..000000000000
--- a/sci-biology/samtools/samtools-1.16.1.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit toolchain-funcs
-
-DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-
-RDEPEND="
- dev-lang/perl
- =sci-libs/htslib-$(ver_cut 1-2)*:=
- sys-libs/ncurses:=[unicode(+)]
- sys-libs/zlib"
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-src_prepare() {
- default
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --with-ncurses \
- --with-htslib=system \
- CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)"
-}
-
-src_compile() {
- emake AR="$(tc-getAR)"
-}
-
-src_install() {
- default
-
- dodoc -r examples
- docompress -x /usr/share/doc/${PF}/examples
-}