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Diffstat (limited to 'sci-biology/samtools/samtools-1.5.ebuild')
-rw-r--r-- | sci-biology/samtools/samtools-1.5.ebuild | 61 |
1 files changed, 0 insertions, 61 deletions
diff --git a/sci-biology/samtools/samtools-1.5.ebuild b/sci-biology/samtools/samtools-1.5.ebuild deleted file mode 100644 index c2bc7ce89cf6..000000000000 --- a/sci-biology/samtools/samtools-1.5.ebuild +++ /dev/null @@ -1,61 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit autotools python-r1 toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="examples" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-${PV}* - sys-libs/ncurses:0= - sys-libs/zlib - ${PYTHON_DEPS}" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -PATCHES=( "${FILESDIR}/${PN}-1.5-buildsystem.patch" ) - -src_prepare() { - default - - python_setup - python_fix_shebang misc/varfilter.py - - # remove bundled htslib - rm -r htslib-* || die - - eautoreconf -} - -src_test() { - local -x LD_LIBRARY_PATH="${S}" - default -} - -src_install() { - default - - # install libbam and headers - dolib.so libbam.so* - - insinto /usr/include/bam - doins *.h - - if use examples; then - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples - fi -} |